Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.21■□□□□ 0.35
TPM4P67936 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.21■□□□□ 0.35
TPM4P67936 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
TPM4P67936 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.21■□□□□ 0.35
TPM4P67936 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TPM4P67936 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TPM4P67936 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
TPM4P67936 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
TPM4P67936 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.21■□□□□ 0.35
TPM4P67936 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.21■□□□□ 0.34
TPM4P67936 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
TPM4P67936 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TPM4P67936 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TPM4P67936 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
TPM4P67936 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TPM4P67936 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TPM4P67936 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.2■□□□□ 0.34
TPM4P67936 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 FAM58CP-201ENST00000435741 640 ntBASIC17.2■□□□□ 0.34
TPM4P67936 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.2■□□□□ 0.34
TPM4P67936 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 RARRES2P9-201ENST00000565168 469 ntBASIC17.2■□□□□ 0.34
TPM4P67936 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 AC092865.6-201ENST00000642101 219 ntBASIC17.2■□□□□ 0.34
TPM4P67936 AC005252.3-201ENST00000623855 2258 ntBASIC17.2■□□□□ 0.34
TPM4P67936 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TPM4P67936 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM4P67936 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
TPM4P67936 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM4P67936 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM4P67936 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TPM4P67936 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 LINC01230-201ENST00000625222 3017 ntBASIC17.19■□□□□ 0.34
TPM4P67936 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM4P67936 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM4P67936 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM4P67936 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM4P67936 RPL13AP23-201ENST00000480739 586 ntBASIC17.19■□□□□ 0.34
TPM4P67936 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TPM4P67936 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM4P67936 AC079140.1-201ENST00000508039 487 ntBASIC17.19■□□□□ 0.34
TPM4P67936 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM4P67936 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms