Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
VCPP55072 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VCPP55072 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.41■□□□□ 0.22
VCPP55072 HINT2P1-201ENST00000419438 481 ntBASIC16.41■□□□□ 0.22
VCPP55072 TARDBPP1-201ENST00000442013 1203 ntBASIC16.41■□□□□ 0.22
VCPP55072 LDHBP1-201ENST00000455730 1119 ntBASIC16.41■□□□□ 0.22
VCPP55072 RN7SL399P-201ENST00000471648 279 ntBASIC16.41■□□□□ 0.22
VCPP55072 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.41■□□□□ 0.22
VCPP55072 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 AP001889.1-201ENST00000525414 633 ntBASIC16.41■□□□□ 0.22
VCPP55072 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 AC105129.2-201ENST00000559536 390 ntBASIC16.41■□□□□ 0.22
VCPP55072 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.41■□□□□ 0.22
VCPP55072 MIR4722-201ENST00000578292 60 ntBASIC16.41■□□□□ 0.22
VCPP55072 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.41■□□□□ 0.22
VCPP55072 AL450472.2-201ENST00000603663 1156 ntBASIC16.41■□□□□ 0.22
VCPP55072 AC133539.2-201ENST00000604757 467 ntBASIC16.41■□□□□ 0.22
VCPP55072 AL022328.3-201ENST00000607943 679 ntBASIC16.41■□□□□ 0.22
VCPP55072 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
VCPP55072 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VCPP55072 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.41■□□□□ 0.22
VCPP55072 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.41■□□□□ 0.22
VCPP55072 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.4■□□□□ 0.22
VCPP55072 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 AP002414.2-201ENST00000591780 3365 ntBASIC16.4■□□□□ 0.22
VCPP55072 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.4■□□□□ 0.22
VCPP55072 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 AC026954.1-201ENST00000429771 1293 ntBASIC16.4■□□□□ 0.22
VCPP55072 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.4■□□□□ 0.22
VCPP55072 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 MIR4706-201ENST00000582134 82 ntBASIC16.4■□□□□ 0.22
VCPP55072 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.4■□□□□ 0.22
VCPP55072 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
VCPP55072 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 Z97205.2-201ENST00000564697 1639 ntBASIC16.4■□□□□ 0.22
VCPP55072 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.4■□□□□ 0.22
VCPP55072 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VCPP55072 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCPP55072 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.4■□□□□ 0.22
VCPP55072 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
VCPP55072 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VCPP55072 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms