Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL18A1P39060 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.54■□□□□ 0.72
COL18A1P39060 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC19.54■□□□□ 0.72
COL18A1P39060 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.54■□□□□ 0.72
COL18A1P39060 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
COL18A1P39060 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL18A1P39060 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 AP000911.2-201ENST00000534330 502 ntBASIC19.53■□□□□ 0.72
COL18A1P39060 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 NUDT4P2-201ENST00000578341 546 ntBASIC19.53■□□□□ 0.72
COL18A1P39060 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 AC007326.1-201ENST00000604539 458 ntBASIC19.53■□□□□ 0.72
COL18A1P39060 AC087392.5-201ENST00000612517 489 ntBASIC19.53■□□□□ 0.72
COL18A1P39060 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC19.53■□□□□ 0.72
COL18A1P39060 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.53■□□□□ 0.72
COL18A1P39060 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
COL18A1P39060 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL18A1P39060 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.53■□□□□ 0.72
COL18A1P39060 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL18A1P39060 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COL18A1P39060 AC092580.1-201ENST00000433998 658 ntBASIC19.52■□□□□ 0.72
COL18A1P39060 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC19.52■□□□□ 0.72
COL18A1P39060 AC007952.4-201ENST00000573866 637 ntBASIC19.52■□□□□ 0.72
COL18A1P39060 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 AP001184.1-201ENST00000637936 376 ntBASIC19.52■□□□□ 0.72
COL18A1P39060 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.52■□□□□ 0.72
COL18A1P39060 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 AC026691.1-201ENST00000602502 2017 ntBASIC19.52■□□□□ 0.72
COL18A1P39060 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL18A1P39060 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL18A1P39060 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL18A1P39060 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL18A1P39060 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL18A1P39060 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.52■□□□□ 0.71
COL18A1P39060 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.52■□□□□ 0.71
COL18A1P39060 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
COL18A1P39060 MIR1227-201ENST00000408484 88 ntBASIC19.52■□□□□ 0.71
COL18A1P39060 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC19.52■□□□□ 0.71
COL18A1P39060 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL18A1P39060 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC19.52■□□□□ 0.71
COL18A1P39060 CR383656.3-201ENST00000551315 183 ntBASIC19.52■□□□□ 0.71
COL18A1P39060 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC19.52■□□□□ 0.71
COL18A1P39060 AL022344.2-201ENST00000568976 968 ntBASIC19.52■□□□□ 0.71
COL18A1P39060 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL18A1P39060 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
COL18A1P39060 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC19.52■□□□□ 0.71
COL18A1P39060 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL18A1P39060 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL18A1P39060 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL18A1P39060 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL18A1P39060 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms