Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.58□□□□□ -0.08
SDC1P18827 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.58□□□□□ -0.08
SDC1P18827 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.58□□□□□ -0.08
SDC1P18827 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.58□□□□□ -0.08
SDC1P18827 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.58□□□□□ -0.08
SDC1P18827 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.58□□□□□ -0.08
SDC1P18827 AC008738.7-201ENST00000609744 511 ntBASIC14.58□□□□□ -0.08
SDC1P18827 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SDC1P18827 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 KRT18P28-201ENST00000453838 1332 ntBASIC14.58□□□□□ -0.08
SDC1P18827 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.58□□□□□ -0.08
SDC1P18827 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.58□□□□□ -0.08
SDC1P18827 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SDC1P18827 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SDC1P18827 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.57□□□□□ -0.08
SDC1P18827 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 MYO15B-237ENST00000642007 4893 ntBASIC14.57□□□□□ -0.08
SDC1P18827 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SDC1P18827 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SDC1P18827 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.57□□□□□ -0.08
SDC1P18827 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.57□□□□□ -0.08
SDC1P18827 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.57□□□□□ -0.08
SDC1P18827 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 AC135586.1-201ENST00000539323 574 ntBASIC14.57□□□□□ -0.08
SDC1P18827 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.57□□□□□ -0.08
SDC1P18827 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.57□□□□□ -0.08
SDC1P18827 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 SRD5A3P1-201ENST00000603021 949 ntBASIC14.57□□□□□ -0.08
SDC1P18827 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.57□□□□□ -0.08
SDC1P18827 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SDC1P18827 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.57□□□□□ -0.08
SDC1P18827 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SDC1P18827 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.56□□□□□ -0.08
SDC1P18827 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.56□□□□□ -0.08
SDC1P18827 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.56□□□□□ -0.08
SDC1P18827 AC004890.2-204ENST00000481968 304 ntBASIC14.56□□□□□ -0.08
SDC1P18827 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.56□□□□□ -0.08
SDC1P18827 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 AC004790.1-201ENST00000612686 536 ntBASIC14.56□□□□□ -0.08
SDC1P18827 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 AC097359.2-201ENST00000604992 2389 ntBASIC14.56□□□□□ -0.08
SDC1P18827 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms