Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
COL6A3P12111 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 AC092364.2-201ENST00000596710 2692 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
COL6A3P12111 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.4■□□□□ 0.06
COL6A3P12111 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A3P12111 KRT18P36-201ENST00000411618 1276 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 SRP14-208ENST00000560773 468 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A3P12111 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC15.4■□□□□ 0.06
COL6A3P12111 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.06
COL6A3P12111 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A3P12111 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
COL6A3P12111 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
COL6A3P12111 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A3P12111 MED15P3-201ENST00000413613 326 ntBASIC15.39■□□□□ 0.05
COL6A3P12111 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC15.39■□□□□ 0.05
COL6A3P12111 RNA5SP406-201ENST00000516106 112 ntBASIC15.39■□□□□ 0.05
COL6A3P12111 OR5BD1P-201ENST00000532527 817 ntBASIC15.39■□□□□ 0.05
COL6A3P12111 BMF-206ENST00000558774 671 ntTSL 3 BASIC15.39■□□□□ 0.05
COL6A3P12111 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 RN7SL478P-201ENST00000584358 298 ntBASIC15.39■□□□□ 0.05
COL6A3P12111 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC15.39■□□□□ 0.05
COL6A3P12111 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC15.39■□□□□ 0.05
COL6A3P12111 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.39■□□□□ 0.05
COL6A3P12111 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A3P12111 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A3P12111 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
COL6A3P12111 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC15.39■□□□□ 0.05
COL6A3P12111 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC15.39■□□□□ 0.05
COL6A3P12111 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A3P12111 RPL4P6-201ENST00000438116 1304 ntBASIC15.39■□□□□ 0.05
COL6A3P12111 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL6A3P12111 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC15.38■□□□□ 0.05
COL6A3P12111 AC018638.5-201ENST00000450885 754 ntBASIC15.38■□□□□ 0.05
COL6A3P12111 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A3P12111 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A3P12111 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
COL6A3P12111 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 AL954722.1-201ENST00000431238 259 ntBASIC15.38■□□□□ 0.05
COL6A3P12111 XBP1P1-201ENST00000436573 652 ntBASIC15.38■□□□□ 0.05
COL6A3P12111 TREX1-203ENST00000456089 629 ntTSL 3 BASIC15.38■□□□□ 0.05
COL6A3P12111 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 AC026434.2-201ENST00000506094 1078 ntBASIC15.38■□□□□ 0.05
COL6A3P12111 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A3P12111 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A3P12111 Z82244.2-201ENST00000632196 448 ntBASIC15.38■□□□□ 0.05
COL6A3P12111 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
COL6A3P12111 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A3P12111 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A3P12111 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A3P12111 CELP-201ENST00000411440 1249 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A3P12111 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
COL6A3P12111 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms