Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 MIR600HG-201ENST00000449175 5984 ntBASIC14.86□□□□□ -0.03
TNFP01375 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TNFP01375 AL157414.3-201ENST00000624276 1954 ntBASIC14.86□□□□□ -0.03
TNFP01375 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
TNFP01375 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.86□□□□□ -0.03
TNFP01375 AL391280.1-201ENST00000506969 1062 ntBASIC14.86□□□□□ -0.03
TNFP01375 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.86□□□□□ -0.03
TNFP01375 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.86□□□□□ -0.03
TNFP01375 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.86□□□□□ -0.03
TNFP01375 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
TNFP01375 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.86□□□□□ -0.03
TNFP01375 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.86□□□□□ -0.03
TNFP01375 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 AL022328.3-201ENST00000607943 679 ntBASIC14.86□□□□□ -0.03
TNFP01375 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.86□□□□□ -0.03
TNFP01375 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.86□□□□□ -0.03
TNFP01375 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.86□□□□□ -0.03
TNFP01375 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.86□□□□□ -0.03
TNFP01375 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.85□□□□□ -0.03
TNFP01375 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
TNFP01375 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.85□□□□□ -0.03
TNFP01375 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.85□□□□□ -0.03
TNFP01375 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 AC079178.1-201ENST00000420915 656 ntBASIC14.85□□□□□ -0.03
TNFP01375 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 AL591846.1-201ENST00000451736 433 ntBASIC14.85□□□□□ -0.03
TNFP01375 AC104306.2-201ENST00000451877 341 ntBASIC14.85□□□□□ -0.03
TNFP01375 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 RPSAP36-202ENST00000494591 1261 ntBASIC14.85□□□□□ -0.03
TNFP01375 MESTP3-201ENST00000503460 968 ntBASIC14.85□□□□□ -0.03
TNFP01375 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.85□□□□□ -0.03
TNFP01375 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
TNFP01375 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.85□□□□□ -0.03
TNFP01375 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
TNFP01375 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 PPY2P-201ENST00000582808 702 ntBASIC14.85□□□□□ -0.03
TNFP01375 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 AC244093.1-201ENST00000610837 814 ntBASIC14.85□□□□□ -0.03
TNFP01375 AC244157.2-201ENST00000616239 1006 ntBASIC14.85□□□□□ -0.03
TNFP01375 AC138466.3-201ENST00000619983 221 ntBASIC14.85□□□□□ -0.03
TNFP01375 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 REXO1L4P-201ENST00000605109 1937 ntBASIC14.85□□□□□ -0.03
TNFP01375 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.85□□□□□ -0.03
TNFP01375 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
TNFP01375 CLUHP2-201ENST00000426660 1303 ntBASIC14.85□□□□□ -0.03
TNFP01375 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.85□□□□□ -0.03
TNFP01375 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TNFP01375 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TNFP01375 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.84□□□□□ -0.03
TNFP01375 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TNFP01375 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TNFP01375 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms