Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
LDLRP01130 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.88□□□□□ -0.03
LDLRP01130 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.88□□□□□ -0.03
LDLRP01130 MIR1909-201ENST00000411312 80 ntBASIC14.88□□□□□ -0.03
LDLRP01130 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.88□□□□□ -0.03
LDLRP01130 AL353779.1-201ENST00000434793 351 ntBASIC14.88□□□□□ -0.03
LDLRP01130 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.88□□□□□ -0.03
LDLRP01130 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 API5-211ENST00000534695 560 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 AC018529.1-201ENST00000613063 361 ntBASIC14.88□□□□□ -0.03
LDLRP01130 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
LDLRP01130 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
LDLRP01130 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 AC007541.1-201ENST00000570282 1469 ntBASIC14.88□□□□□ -0.03
LDLRP01130 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
LDLRP01130 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 ZBED1P1-201ENST00000502364 1930 ntBASIC14.88□□□□□ -0.03
LDLRP01130 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LDLRP01130 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
LDLRP01130 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.88□□□□□ -0.03
LDLRP01130 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDLRP01130 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 AC009477.1-201ENST00000452936 217 ntBASIC14.87□□□□□ -0.03
LDLRP01130 HLA-V-204ENST00000476601 1289 ntBASIC14.87□□□□□ -0.03
LDLRP01130 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms