Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 AL607033.1-201ENST00000623900 1599 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 HIST3H2BA-201ENST00000436555 524 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 CNN2P2-201ENST00000443536 909 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 CNN2P3-201ENST00000450201 906 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 AL136317.3-201ENST00000618497 906 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 MIR6069-201ENST00000620069 79 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 AL928921.2-201ENST00000641325 2442 ntBASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AC107918.4-201ENST00000641966 3141 ntBASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 SERBP1P3-201ENST00000459980 809 ntBASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 REXO1L2P-201ENST00000425429 2069 ntBASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC39Q9UFE4 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 MBLAC2-202ENST00000514906 1936 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms