Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 FAM220BP-201ENST00000377689 816 ntBASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 PHKG1P2-201ENST00000457537 863 ntBASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AC126365.1-201ENST00000578585 1514 ntBASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 UXT-AS1-201ENST00000590504 1525 ntBASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 CYP4F24P-201ENST00000586049 1580 ntBASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AC142381.1-201ENST00000426099 345 ntBASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AC120114.3-201ENST00000611923 658 ntBASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.29□□□□□ -0.28
CHMP1AQ9HD42 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms