Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP88Q99567 CNN2P8-201ENST00000421872 913 ntBASIC17.91■□□□□ 0.46
NUP88Q99567 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP88Q99567 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.91■□□□□ 0.46
NUP88Q99567 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP88Q99567 AC023824.1-201ENST00000562945 2975 ntBASIC17.91■□□□□ 0.46
NUP88Q99567 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP88Q99567 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 RHOXF1P1-202ENST00000635473 501 ntBASIC17.91■□□□□ 0.46
NUP88Q99567 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.91■□□□□ 0.46
NUP88Q99567 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.9■□□□□ 0.46
NUP88Q99567 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
NUP88Q99567 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.9■□□□□ 0.46
NUP88Q99567 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.9■□□□□ 0.46
NUP88Q99567 FAM21FP-201ENST00000426241 1131 ntBASIC17.9■□□□□ 0.46
NUP88Q99567 ACTBP11-201ENST00000436287 1126 ntBASIC17.9■□□□□ 0.46
NUP88Q99567 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.9■□□□□ 0.46
NUP88Q99567 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.9■□□□□ 0.46
NUP88Q99567 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.9■□□□□ 0.46
NUP88Q99567 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.9■□□□□ 0.46
NUP88Q99567 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.9■□□□□ 0.46
NUP88Q99567 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.9■□□□□ 0.46
NUP88Q99567 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
NUP88Q99567 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP88Q99567 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.89■□□□□ 0.46
NUP88Q99567 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
NUP88Q99567 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
NUP88Q99567 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.89■□□□□ 0.46
NUP88Q99567 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
NUP88Q99567 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP88Q99567 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP88Q99567 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP88Q99567 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.89■□□□□ 0.45
NUP88Q99567 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP88Q99567 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.89■□□□□ 0.45
NUP88Q99567 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
NUP88Q99567 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.89■□□□□ 0.45
NUP88Q99567 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.89■□□□□ 0.45
NUP88Q99567 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP88Q99567 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
NUP88Q99567 RNA5SP412-201ENST00000516234 123 ntBASIC17.89■□□□□ 0.45
NUP88Q99567 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP88Q99567 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.89■□□□□ 0.45
NUP88Q99567 RN7SL219P-201ENST00000582872 296 ntBASIC17.89■□□□□ 0.45
NUP88Q99567 AC138951.2-201ENST00000623455 1161 ntBASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms