Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 C18orf15-201ENST00000623680 2534 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 PTP4A1P2-201ENST00000546033 454 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC009486.1-201ENST00000569860 813 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 CLUHP6-201ENST00000580789 941 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC015936.2-201ENST00000593177 259 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 AL645728.2-202ENST00000641679 227 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PTCHD1Q96NR3 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AC112693.3-201ENST00000624819 1983 ntBASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AC023157.3-201ENST00000619086 2088 ntBASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AC093433.1-201ENST00000458048 571 ntBASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms