Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.44■□□□□ 0.38
ERCC4Q92889 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 LINC01115-203ENST00000606068 577 ntBASIC17.44■□□□□ 0.38
ERCC4Q92889 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.44■□□□□ 0.38
ERCC4Q92889 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
ERCC4Q92889 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ERCC4Q92889 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.44■□□□□ 0.38
ERCC4Q92889 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 WASH3P-207ENST00000560956 1394 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.43■□□□□ 0.38
ERCC4Q92889 FO538757.1-201ENST00000623083 1397 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
ERCC4Q92889 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC17.43■□□□□ 0.38
ERCC4Q92889 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.43■□□□□ 0.38
ERCC4Q92889 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 RPL37AP1-201ENST00000412502 279 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 DNAJB3-201ENST00000446806 729 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 AC023141.5-201ENST00000458585 616 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.43■□□□□ 0.38
ERCC4Q92889 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.43■□□□□ 0.38
ERCC4Q92889 AC004835.2-201ENST00000603762 682 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 AL589739.1-201ENST00000607720 493 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.43■□□□□ 0.38
ERCC4Q92889 LINC00628-201ENST00000628516 1289 ntBASIC17.43■□□□□ 0.38
ERCC4Q92889 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.43■□□□□ 0.38
ERCC4Q92889 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.43■□□□□ 0.38
ERCC4Q92889 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ERCC4Q92889 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.42■□□□□ 0.38
ERCC4Q92889 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.42■□□□□ 0.38
ERCC4Q92889 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.42■□□□□ 0.38
ERCC4Q92889 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.42■□□□□ 0.38
ERCC4Q92889 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.42■□□□□ 0.38
ERCC4Q92889 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.42■□□□□ 0.38
ERCC4Q92889 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.42■□□□□ 0.38
ERCC4Q92889 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.42■□□□□ 0.38
ERCC4Q92889 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
ERCC4Q92889 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.42■□□□□ 0.38
ERCC4Q92889 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.42■□□□□ 0.38
ERCC4Q92889 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
ERCC4Q92889 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ERCC4Q92889 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.42■□□□□ 0.38
ERCC4Q92889 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.42■□□□□ 0.38
ERCC4Q92889 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms