Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 NKAIN1P1-201ENST00000435754 582 ntBASIC15.3■□□□□ 0.04
HMGB4Q8WW32 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 HIST2H2BB-201ENST00000449108 381 ntBASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 RN7SL190P-201ENST00000582519 257 ntBASIC15.3■□□□□ 0.04
HMGB4Q8WW32 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AC055811.4-201ENST00000624039 1754 ntBASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB4Q8WW32 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SERPINA13P-202ENST00000478994 924 ntBASIC15.29■□□□□ 0.04
HMGB4Q8WW32 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 AC005730.2-201ENST00000564549 1184 ntBASIC15.29■□□□□ 0.04
HMGB4Q8WW32 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 AP001002.3-201ENST00000623482 206 ntBASIC15.29■□□□□ 0.04
HMGB4Q8WW32 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 AC006449.5-201ENST00000610658 2098 ntBASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms