Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 BNIP3P42-201ENST00000454982 569 ntBASIC14.27□□□□□ -0.13
BEST3Q8N1M1 FTH1P14-201ENST00000482930 551 ntBASIC14.27□□□□□ -0.13
BEST3Q8N1M1 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 GAPDHP40-201ENST00000505218 1006 ntBASIC14.27□□□□□ -0.13
BEST3Q8N1M1 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 BNIP3P29-201ENST00000598302 571 ntBASIC14.27□□□□□ -0.13
BEST3Q8N1M1 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 AC011447.5-201ENST00000616168 564 ntBASIC14.27□□□□□ -0.13
BEST3Q8N1M1 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.26□□□□□ -0.13
BEST3Q8N1M1 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 HLA-V-201ENST00000429037 534 ntBASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AC007551.1-201ENST00000457394 519 ntBASIC14.26□□□□□ -0.13
BEST3Q8N1M1 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AC022137.2-201ENST00000503482 481 ntBASIC14.26□□□□□ -0.13
BEST3Q8N1M1 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 AL138799.1-201ENST00000448213 1675 ntBASIC14.26□□□□□ -0.13
BEST3Q8N1M1 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.26□□□□□ -0.13
BEST3Q8N1M1 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms