Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 FAM131B-203ENST00000409408 5856 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 AC018892.3-201ENST00000623986 2499 ntBASIC9.48□□□□□ -0.89
LINC00643Q86TS7 FHOD1-201ENST00000258201 3990 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 GPR12-202ENST00000405846 4850 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 ZFAT-209ENST00000520727 4686 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 KRT78-202ENST00000359499 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 PCDHB2-201ENST00000194155 4126 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 BEND6-202ENST00000370746 2379 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
LINC00643Q86TS7 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ODF2-213ENST00000448249 2059 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 HNRNPMP1-201ENST00000560685 1768 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 CEP78-205ENST00000424347 11198 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AAGAB-207ENST00000561452 2251 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AC022447.6-201ENST00000515522 438 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SOX15-203ENST00000570788 1093 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 RPS15-212ENST00000593052 629 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ANKRD20A8P-203ENST00000641373 517 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AGAP6-202ENST00000412531 2372 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AC126564.1-201ENST00000623628 2013 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 DDX12P-201ENST00000432996 2947 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 AC012313.8-201ENST00000595059 5402 ntBASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms