Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP3Q7Z494 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 AL139008.1-201ENST00000437894 228 ntBASIC20.38■□□□□ 0.85
NPHP3Q7Z494 LYPLA2P1-203ENST00000447689 696 ntBASIC20.38■□□□□ 0.85
NPHP3Q7Z494 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 AL022344.2-201ENST00000568976 968 ntBASIC20.38■□□□□ 0.85
NPHP3Q7Z494 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 RAN-210ENST00000541630 1475 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 LINC01165-201ENST00000445190 1623 ntBASIC20.38■□□□□ 0.85
NPHP3Q7Z494 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 PES1-204ENST00000402284 2144 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP3Q7Z494 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 MBP-201ENST00000354542 575 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 AC144522.1-201ENST00000625111 1658 ntBASIC20.37■□□□□ 0.85
NPHP3Q7Z494 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 AC015909.3-201ENST00000572855 1794 ntBASIC20.37■□□□□ 0.85
NPHP3Q7Z494 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP3Q7Z494 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 AC006449.5-201ENST00000610658 2098 ntBASIC20.36■□□□□ 0.85
NPHP3Q7Z494 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 IDS-203ENST00000428056 1213 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC20.36■□□□□ 0.85
NPHP3Q7Z494 DUTP3-201ENST00000450025 415 ntBASIC20.36■□□□□ 0.85
NPHP3Q7Z494 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 SIGLEC18P-201ENST00000602271 909 ntBASIC20.36■□□□□ 0.85
NPHP3Q7Z494 AC025262.2-201ENST00000623975 1056 ntBASIC20.36■□□□□ 0.85
NPHP3Q7Z494 AC073911.3-201ENST00000624401 631 ntBASIC20.36■□□□□ 0.85
NPHP3Q7Z494 ACE-204ENST00000428043 5120 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms