Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SMARCD3Q6STE5 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SMARCD3Q6STE5 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
SMARCD3Q6STE5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SMARCD3Q6STE5 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SMARCD3Q6STE5 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 ACE3P-201ENST00000423435 1973 ntBASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 CICP14-201ENST00000629111 2732 ntBASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 AL079307.3-201ENST00000556114 283 ntBASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 AC015910.1-201ENST00000579400 975 ntBASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 AC009093.7-201ENST00000623853 1223 ntBASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SMARCD3Q6STE5 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 REXO1L2P-201ENST00000425429 2069 ntBASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 MIR4453-201ENST00000584019 89 ntBASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 MIR6080-201ENST00000617359 66 ntBASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.04□□□□□ -0.16
SMARCD3Q6STE5 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.03□□□□□ -0.16
SMARCD3Q6STE5 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
SMARCD3Q6STE5 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMARCD3Q6STE5 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.03□□□□□ -0.16
SMARCD3Q6STE5 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SMARCD3Q6STE5 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SMARCD3Q6STE5 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms