Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXC1Q12948 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXC1Q12948 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 APOBEC3H-201ENST00000348946 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
FOXC1Q12948 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 AL807761.2-201ENST00000422849 729 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXC1Q12948 AC092638.2-201ENST00000441105 947 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXC1Q12948 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXC1Q12948 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 TMCO5B-205ENST00000530020 894 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 AC015909.3-201ENST00000572855 1794 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 RN7SL470P-201ENST00000583069 259 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 AC022148.2-201ENST00000586176 560 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 AC007326.1-201ENST00000604539 458 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 AC068587.6-202ENST00000641839 5619 ntBASIC14.28□□□□□ -0.12
FOXC1Q12948 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXC1Q12948 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXC1Q12948 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
FOXC1Q12948 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
FOXC1Q12948 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXC1Q12948 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
FOXC1Q12948 AC009093.2-202ENST00000620513 2079 ntBASIC14.27□□□□□ -0.12
FOXC1Q12948 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXC1Q12948 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXC1Q12948 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
FOXC1Q12948 AC011477.6-201ENST00000604980 1927 ntBASIC14.27□□□□□ -0.12
FOXC1Q12948 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXC1Q12948 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXC1Q12948 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
FOXC1Q12948 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXC1Q12948 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
FOXC1Q12948 AC018470.1-201ENST00000624790 3129 ntBASIC14.27□□□□□ -0.12
FOXC1Q12948 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
FOXC1Q12948 AC026471.1-201ENST00000564629 3026 ntBASIC14.27□□□□□ -0.12
FOXC1Q12948 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXC1Q12948 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXC1Q12948 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXC1Q12948 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXC1Q12948 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
FOXC1Q12948 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXC1Q12948 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 KRT17P4-201ENST00000429445 819 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC14.27□□□□□ -0.13
FOXC1Q12948 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXC1Q12948 NDUFS6P1-201ENST00000485187 316 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
FOXC1Q12948 CR383656.3-201ENST00000551315 183 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXC1Q12948 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
FOXC1Q12948 SIGLEC18P-201ENST00000602271 909 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 AC079791.1-201ENST00000605356 973 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 AL451064.1-201ENST00000607718 471 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 AC025262.2-201ENST00000623975 1056 ntBASIC14.27□□□□□ -0.13
FOXC1Q12948 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
FOXC1Q12948 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXC1Q12948 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXC1Q12948 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXC1Q12948 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXC1Q12948 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXC1Q12948 AC018695.7-201ENST00000624587 2492 ntBASIC14.26□□□□□ -0.13
FOXC1Q12948 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXC1Q12948 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms