Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.83■□□□□ 0.28
CENPFP49454 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPFP49454 AC093909.3-201ENST00000504783 336 ntBASIC16.83■□□□□ 0.28
CENPFP49454 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.83■□□□□ 0.28
CENPFP49454 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPFP49454 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.82■□□□□ 0.28
CENPFP49454 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.82■□□□□ 0.28
CENPFP49454 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.82■□□□□ 0.28
CENPFP49454 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.82■□□□□ 0.28
CENPFP49454 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.82■□□□□ 0.28
CENPFP49454 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.82■□□□□ 0.28
CENPFP49454 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPFP49454 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC16.82■□□□□ 0.28
CENPFP49454 AC023090.2-201ENST00000625182 2110 ntBASIC16.82■□□□□ 0.28
CENPFP49454 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CENPFP49454 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 AC004066.1-201ENST00000502488 802 ntBASIC16.81■□□□□ 0.28
CENPFP49454 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 ENPP7P8-202ENST00000527856 1345 ntBASIC16.81■□□□□ 0.28
CENPFP49454 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.81■□□□□ 0.28
CENPFP49454 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.81■□□□□ 0.28
CENPFP49454 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 HLA-K-203ENST00000430151 1046 ntBASIC16.81■□□□□ 0.28
CENPFP49454 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.81■□□□□ 0.28
CENPFP49454 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.81■□□□□ 0.28
CENPFP49454 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC16.81■□□□□ 0.28
CENPFP49454 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CENPFP49454 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CENPFP49454 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CENPFP49454 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.8■□□□□ 0.28
CENPFP49454 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.8■□□□□ 0.28
CENPFP49454 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.8■□□□□ 0.28
CENPFP49454 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
CENPFP49454 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.8■□□□□ 0.28
CENPFP49454 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.8■□□□□ 0.28
CENPFP49454 MIR6816-201ENST00000620368 66 ntBASIC16.8■□□□□ 0.28
CENPFP49454 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.8■□□□□ 0.28
CENPFP49454 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.8■□□□□ 0.28
CENPFP49454 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.8■□□□□ 0.28
CENPFP49454 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
CENPFP49454 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.8■□□□□ 0.28
CENPFP49454 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.8■□□□□ 0.28
CENPFP49454 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CENPFP49454 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms