Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.56□□□□□ -0.24
SOX2P48431 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
SOX2P48431 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.56□□□□□ -0.24
SOX2P48431 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.56□□□□□ -0.24
SOX2P48431 TPM4P1-201ENST00000436100 807 ntBASIC13.56□□□□□ -0.24
SOX2P48431 AL592309.1-201ENST00000443127 649 ntBASIC13.56□□□□□ -0.24
SOX2P48431 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
SOX2P48431 AC069335.1-201ENST00000489972 472 ntBASIC13.56□□□□□ -0.24
SOX2P48431 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.56□□□□□ -0.24
SOX2P48431 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 AC018529.2-202ENST00000611482 3087 ntBASIC13.56□□□□□ -0.24
SOX2P48431 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX2P48431 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX2P48431 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX2P48431 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
SOX2P48431 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
SOX2P48431 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX2P48431 AL353705.2-201ENST00000428243 662 ntBASIC13.55□□□□□ -0.24
SOX2P48431 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.55□□□□□ -0.24
SOX2P48431 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.55□□□□□ -0.24
SOX2P48431 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX2P48431 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX2P48431 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX2P48431 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX2P48431 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
SOX2P48431 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 FAM197Y3-203ENST00000618346 717 ntBASIC13.55□□□□□ -0.24
SOX2P48431 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX2P48431 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
SOX2P48431 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX2P48431 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 BX640514.1-201ENST00000583223 1918 ntBASIC13.54□□□□□ -0.24
SOX2P48431 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
SOX2P48431 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.54□□□□□ -0.24
SOX2P48431 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms