Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
TNFP01375 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TNFP01375 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.89□□□□□ -0.03
TNFP01375 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
TNFP01375 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TNFP01375 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.88□□□□□ -0.03
TNFP01375 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 KRT8P44-201ENST00000441609 1350 ntBASIC14.88□□□□□ -0.03
TNFP01375 AC020907.1-201ENST00000616460 1350 ntBASIC14.88□□□□□ -0.03
TNFP01375 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TNFP01375 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.88□□□□□ -0.03
TNFP01375 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
TNFP01375 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
TNFP01375 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.88□□□□□ -0.03
TNFP01375 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.88□□□□□ -0.03
TNFP01375 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TNFP01375 FTLP10-202ENST00000505798 471 ntBASIC14.88□□□□□ -0.03
TNFP01375 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
TNFP01375 C2orf69P2-201ENST00000562032 1123 ntBASIC14.88□□□□□ -0.03
TNFP01375 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.88□□□□□ -0.03
TNFP01375 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.88□□□□□ -0.03
TNFP01375 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.88□□□□□ -0.03
TNFP01375 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.88□□□□□ -0.03
TNFP01375 AC243960.2-201ENST00000600996 747 ntBASIC14.88□□□□□ -0.03
TNFP01375 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.88□□□□□ -0.03
TNFP01375 OR10B1P-201ENST00000601666 907 ntBASIC14.88□□□□□ -0.03
TNFP01375 AL118558.3-201ENST00000607414 1079 ntBASIC14.88□□□□□ -0.03
TNFP01375 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 MIR6787-201ENST00000616675 61 ntBASIC14.88□□□□□ -0.03
TNFP01375 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.88□□□□□ -0.03
TNFP01375 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TNFP01375 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.88□□□□□ -0.03
TNFP01375 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
TNFP01375 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.88□□□□□ -0.03
TNFP01375 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.88□□□□□ -0.03
TNFP01375 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
TNFP01375 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.87□□□□□ -0.03
TNFP01375 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TNFP01375 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.87□□□□□ -0.03
TNFP01375 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 RN7SL713P-201ENST00000582127 302 ntBASIC14.87□□□□□ -0.03
TNFP01375 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.87□□□□□ -0.03
TNFP01375 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.87□□□□□ -0.03
TNFP01375 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.87□□□□□ -0.03
TNFP01375 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.87□□□□□ -0.03
TNFP01375 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.87□□□□□ -0.03
TNFP01375 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.87□□□□□ -0.03
TNFP01375 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TNFP01375 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.87□□□□□ -0.03
TNFP01375 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TNFP01375 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TNFP01375 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TNFP01375 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms