Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 REXO1L5P-201ENST00000622260 2098 ntBASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 DUX4L47-201ENST00000566374 394 ntBASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 MIR4538-201ENST00000581377 78 ntBASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 EEF1DP1-201ENST00000585891 896 ntBASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 AC091271.1-201ENST00000611877 1162 ntBASIC15.27■□□□□ 0.04
C1QTNF3-AMACRE9PGA6 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 REXO1L4P-201ENST00000605109 1937 ntBASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 POM121L8P-201ENST00000417732 1281 ntBASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 POM121L9P-203ENST00000441984 1285 ntBASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CNN2P10-201ENST00000443067 918 ntBASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 FAM86HP-204ENST00000513466 959 ntBASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 FAM8A2P-201ENST00000528813 1142 ntBASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 MIR4741-201ENST00000579822 90 ntBASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
C1QTNF3-AMACRE9PGA6 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms