Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.34■■□□□ 1.97
RNF41Q9H4P4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
RNF41Q9H4P4 AL022069.1-201ENST00000568025 1636 ntBASIC27.34■■□□□ 1.97
RNF41Q9H4P4 AL161729.1-201ENST00000604104 1402 ntBASIC27.33■■□□□ 1.97
RNF41Q9H4P4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
RNF41Q9H4P4 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
RNF41Q9H4P4 AC131274.2-201ENST00000580697 1507 ntBASIC27.33■■□□□ 1.97
RNF41Q9H4P4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
RNF41Q9H4P4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.33■■□□□ 1.96
RNF41Q9H4P4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF41Q9H4P4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 AC004448.1-201ENST00000458332 883 ntBASIC27.31■■□□□ 1.96
RNF41Q9H4P4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 SNX5-217ENST00000606557 1087 ntBASIC27.31■■□□□ 1.96
RNF41Q9H4P4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.31■■□□□ 1.96
RNF41Q9H4P4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RNF41Q9H4P4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
RNF41Q9H4P4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.3■■□□□ 1.96
RNF41Q9H4P4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.3■■□□□ 1.96
RNF41Q9H4P4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RNF41Q9H4P4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
RNF41Q9H4P4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF41Q9H4P4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 AL139125.2-201ENST00000623134 1869 ntBASIC27.28■■□□□ 1.96
RNF41Q9H4P4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.28■■□□□ 1.96
RNF41Q9H4P4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.28■■□□□ 1.96
RNF41Q9H4P4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF41Q9H4P4 AC135731.1-201ENST00000569415 2548 ntBASIC27.27■■□□□ 1.96
RNF41Q9H4P4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 TSPY9P-201ENST00000440215 945 ntBASIC27.26■■□□□ 1.95
RNF41Q9H4P4 TSPY11P-201ENST00000442607 1045 ntBASIC27.26■■□□□ 1.95
RNF41Q9H4P4 UNC93B8-201ENST00000511903 705 ntBASIC27.26■■□□□ 1.95
RNF41Q9H4P4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RNF41Q9H4P4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF41Q9H4P4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF41Q9H4P4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
RNF41Q9H4P4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.25■■□□□ 1.95
RNF41Q9H4P4 AC141586.4-201ENST00000624558 1573 ntBASIC27.25■■□□□ 1.95
RNF41Q9H4P4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC27.25■■□□□ 1.95
RNF41Q9H4P4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC27.25■■□□□ 1.95
RNF41Q9H4P4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
RNF41Q9H4P4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
RNF41Q9H4P4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC27.24■■□□□ 1.95
RNF41Q9H4P4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms