Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.31
VPS13AQ96RL7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 AC233992.3-201ENST00000607491 485 ntBASIC23.2■■□□□ 1.3
VPS13AQ96RL7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
VPS13AQ96RL7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS13AQ96RL7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS13AQ96RL7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.19■■□□□ 1.3
VPS13AQ96RL7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.19■■□□□ 1.3
VPS13AQ96RL7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 AC011298.3-201ENST00000615796 283 ntBASIC23.18■■□□□ 1.3
VPS13AQ96RL7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 MIR6722-201ENST00000617286 78 ntBASIC23.18■■□□□ 1.3
VPS13AQ96RL7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
VPS13AQ96RL7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
VPS13AQ96RL7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
VPS13AQ96RL7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 AC123595.1-201ENST00000440769 1046 ntBASIC23.15■■□□□ 1.3
VPS13AQ96RL7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 AC027612.3-201ENST00000413684 1047 ntBASIC23.15■■□□□ 1.3
VPS13AQ96RL7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VPS13AQ96RL7 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
VPS13AQ96RL7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.14■■□□□ 1.3
VPS13AQ96RL7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
VPS13AQ96RL7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.14■■□□□ 1.3
VPS13AQ96RL7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.14■■□□□ 1.3
VPS13AQ96RL7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
VPS13AQ96RL7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VPS13AQ96RL7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VPS13AQ96RL7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VPS13AQ96RL7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.13■■□□□ 1.29
VPS13AQ96RL7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
VPS13AQ96RL7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 AL138724.1-201ENST00000606771 1088 ntBASIC23.12■■□□□ 1.29
VPS13AQ96RL7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
VPS13AQ96RL7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.11■■□□□ 1.29
VPS13AQ96RL7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VPS13AQ96RL7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
VPS13AQ96RL7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
VPS13AQ96RL7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VPS13AQ96RL7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.11■■□□□ 1.29
VPS13AQ96RL7 C17orf82-201ENST00000623772 1530 ntBASIC23.11■■□□□ 1.29
VPS13AQ96RL7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 AC005703.6-201ENST00000623265 1329 ntBASIC23.1■■□□□ 1.29
VPS13AQ96RL7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms