Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC005837.3-201ENST00000612163 286 ntBASIC27.26■■□□□ 1.95
SHROOM1Q2M3G4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM1Q2M3G4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM1Q2M3G4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM1Q2M3G4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC27.25■■□□□ 1.95
SHROOM1Q2M3G4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC27.24■■□□□ 1.95
SHROOM1Q2M3G4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC27.24■■□□□ 1.95
SHROOM1Q2M3G4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
SHROOM1Q2M3G4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM1Q2M3G4 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SHROOM1Q2M3G4 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM1Q2M3G4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM1Q2M3G4 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 AC145676.1-201ENST00000514988 2004 ntBASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM1Q2M3G4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.2■■□□□ 1.95
SHROOM1Q2M3G4 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM1Q2M3G4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM1Q2M3G4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC27.2■■□□□ 1.94
SHROOM1Q2M3G4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
SHROOM1Q2M3G4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM1Q2M3G4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
SHROOM1Q2M3G4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM1Q2M3G4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM1Q2M3G4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.17■■□□□ 1.94
SHROOM1Q2M3G4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM1Q2M3G4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC27.17■■□□□ 1.94
SHROOM1Q2M3G4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
SHROOM1Q2M3G4 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM1Q2M3G4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 UNC93B3-201ENST00000308076 687 ntBASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 PBX2P1-201ENST00000493219 1291 ntBASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 MIR6089-201ENST00000616698 64 ntBASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM1Q2M3G4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM1Q2M3G4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
SHROOM1Q2M3G4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC27.15■■□□□ 1.94
SHROOM1Q2M3G4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM1Q2M3G4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 AL031432.3-201ENST00000607698 485 ntBASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 AC106739.1-201ENST00000617035 715 ntBASIC27.14■■□□□ 1.94
SHROOM1Q2M3G4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM1Q2M3G4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM1Q2M3G4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
SHROOM1Q2M3G4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.13■■□□□ 1.93
SHROOM1Q2M3G4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM1Q2M3G4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM1Q2M3G4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM1Q2M3G4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM1Q2M3G4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM1Q2M3G4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM1Q2M3G4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM1Q2M3G4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
SHROOM1Q2M3G4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM1Q2M3G4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
SHROOM1Q2M3G4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM1Q2M3G4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM1Q2M3G4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC27.11■■□□□ 1.93
SHROOM1Q2M3G4 ZNRF2P3-201ENST00000424200 374 ntBASIC27.1■■□□□ 1.93
SHROOM1Q2M3G4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.1■■□□□ 1.93
SHROOM1Q2M3G4 AL136162.1-201ENST00000607711 1078 ntBASIC27.1■■□□□ 1.93
SHROOM1Q2M3G4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC27.1■■□□□ 1.93
SHROOM1Q2M3G4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC27.09■■□□□ 1.93
SHROOM1Q2M3G4 AC133561.4-201ENST00000566112 224 ntBASIC27.09■■□□□ 1.93
SHROOM1Q2M3G4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM1Q2M3G4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.09■■□□□ 1.93
SHROOM1Q2M3G4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms