Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL031602.1-201ENST00000633169 911 ntBASIC32.55■■■□□ 2.8
MSH6P52701 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
MSH6P52701 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
MSH6P52701 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
MSH6P52701 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC32.54■■■□□ 2.8
MSH6P52701 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC32.54■■■□□ 2.8
MSH6P52701 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC32.54■■■□□ 2.8
MSH6P52701 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC32.54■■■□□ 2.8
MSH6P52701 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
MSH6P52701 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC32.52■■■□□ 2.8
MSH6P52701 YBX1P1-201ENST00000445822 960 ntBASIC32.52■■■□□ 2.8
MSH6P52701 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC32.52■■■□□ 2.8
MSH6P52701 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC32.52■■■□□ 2.8
MSH6P52701 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
MSH6P52701 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
MSH6P52701 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC32.51■■■□□ 2.79
MSH6P52701 AC136469.2-201ENST00000623944 1028 ntBASIC32.51■■■□□ 2.79
MSH6P52701 MPST-208ENST00000628507 698 ntTSL 5 BASIC32.51■■■□□ 2.79
MSH6P52701 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
MSH6P52701 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC32.5■■■□□ 2.79
MSH6P52701 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC32.5■■■□□ 2.79
MSH6P52701 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
MSH6P52701 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC32.5■■■□□ 2.79
MSH6P52701 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
MSH6P52701 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC32.5■■■□□ 2.79
MSH6P52701 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
MSH6P52701 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC32.49■■■□□ 2.79
MSH6P52701 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC32.49■■■□□ 2.79
MSH6P52701 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC32.49■■■□□ 2.79
MSH6P52701 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
MSH6P52701 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
MSH6P52701 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
MSH6P52701 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC32.48■■■□□ 2.79
MSH6P52701 AC004911.1-201ENST00000416316 871 ntBASIC32.48■■■□□ 2.79
MSH6P52701 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC32.48■■■□□ 2.79
MSH6P52701 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC32.48■■■□□ 2.79
MSH6P52701 DLX3-202ENST00000512495 834 ntTSL 2 BASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L2-201ENST00000561772 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L6-201ENST00000626483 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L1-201ENST00000627662 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L8-201ENST00000629013 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L3-201ENST00000630187 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L7-201ENST00000630678 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 DUX4L5-201ENST00000630834 1275 ntBASIC32.48■■■□□ 2.79
MSH6P52701 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
MSH6P52701 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC32.48■■■□□ 2.79
MSH6P52701 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC32.48■■■□□ 2.79
MSH6P52701 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
MSH6P52701 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
MSH6P52701 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC32.48■■■□□ 2.79
MSH6P52701 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
MSH6P52701 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
MSH6P52701 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
MSH6P52701 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
MSH6P52701 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC32.47■■■□□ 2.79
MSH6P52701 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC32.47■■■□□ 2.79
MSH6P52701 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC32.47■■■□□ 2.79
MSH6P52701 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC32.47■■■□□ 2.79
MSH6P52701 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC32.47■■■□□ 2.79
MSH6P52701 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC32.47■■■□□ 2.79
MSH6P52701 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 AC233992.3-201ENST00000607491 485 ntBASIC32.46■■■□□ 2.79
MSH6P52701 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
MSH6P52701 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC32.45■■■□□ 2.79
MSH6P52701 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
MSH6P52701 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
MSH6P52701 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
MSH6P52701 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
MSH6P52701 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC32.44■■■□□ 2.78
MSH6P52701 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
MSH6P52701 HES6-206ENST00000409574 738 ntTSL 2 BASIC32.44■■■□□ 2.78
MSH6P52701 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
MSH6P52701 GRAMD4P2-201ENST00000423297 1097 ntBASIC32.44■■■□□ 2.78
MSH6P52701 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC32.44■■■□□ 2.78
MSH6P52701 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
MSH6P52701 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC32.43■■■□□ 2.78
MSH6P52701 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
MSH6P52701 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC32.43■■■□□ 2.78
MSH6P52701 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
MSH6P52701 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
MSH6P52701 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
MSH6P52701 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
MSH6P52701 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
MSH6P52701 BX842568.3-201ENST00000418104 571 ntBASIC32.42■■■□□ 2.78
MSH6P52701 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC32.42■■■□□ 2.78
MSH6P52701 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC32.42■■■□□ 2.78
MSH6P52701 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC32.41■■■□□ 2.78
MSH6P52701 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
MSH6P52701 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
MSH6P52701 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
MSH6P52701 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
MSH6P52701 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC32.4■■■□□ 2.78
MSH6P52701 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC32.4■■■□□ 2.78
MSH6P52701 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms