Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CIITAP33076 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CIITAP33076 AC004448.1-201ENST00000458332 883 ntBASIC26.21■■□□□ 1.79
CIITAP33076 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.21■■□□□ 1.79
CIITAP33076 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.21■■□□□ 1.79
CIITAP33076 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CIITAP33076 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
CIITAP33076 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.2■■□□□ 1.79
CIITAP33076 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
CIITAP33076 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.2■■□□□ 1.78
CIITAP33076 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CIITAP33076 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
CIITAP33076 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CIITAP33076 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC26.19■■□□□ 1.78
CIITAP33076 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CIITAP33076 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
CIITAP33076 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.19■■□□□ 1.78
CIITAP33076 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CIITAP33076 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CIITAP33076 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CIITAP33076 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.19■■□□□ 1.78
CIITAP33076 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CIITAP33076 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CIITAP33076 TSPY9P-201ENST00000440215 945 ntBASIC26.18■■□□□ 1.78
CIITAP33076 TSPY11P-201ENST00000442607 1045 ntBASIC26.18■■□□□ 1.78
CIITAP33076 AL356441.2-201ENST00000443009 864 ntBASIC26.18■■□□□ 1.78
CIITAP33076 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
CIITAP33076 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.18■■□□□ 1.78
CIITAP33076 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.18■■□□□ 1.78
CIITAP33076 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.18■■□□□ 1.78
CIITAP33076 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CIITAP33076 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CIITAP33076 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
CIITAP33076 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.17■■□□□ 1.78
CIITAP33076 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.17■■□□□ 1.78
CIITAP33076 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.17■■□□□ 1.78
CIITAP33076 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.17■■□□□ 1.78
CIITAP33076 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.17■■□□□ 1.78
CIITAP33076 MIR6722-201ENST00000617286 78 ntBASIC26.17■■□□□ 1.78
CIITAP33076 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CIITAP33076 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
CIITAP33076 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
CIITAP33076 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.16■■□□□ 1.78
CIITAP33076 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.16■■□□□ 1.78
CIITAP33076 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.15■■□□□ 1.78
CIITAP33076 AL161729.1-201ENST00000604104 1402 ntBASIC26.15■■□□□ 1.78
CIITAP33076 AL022069.1-201ENST00000568025 1636 ntBASIC26.15■■□□□ 1.78
CIITAP33076 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
CIITAP33076 STK32C-205ENST00000456004 607 ntTSL 2 BASIC26.15■■□□□ 1.78
CIITAP33076 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.15■■□□□ 1.78
CIITAP33076 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CIITAP33076 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CIITAP33076 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.15■■□□□ 1.78
CIITAP33076 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CIITAP33076 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CIITAP33076 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
CIITAP33076 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.14■■□□□ 1.78
CIITAP33076 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.14■■□□□ 1.78
CIITAP33076 AC010997.5-201ENST00000609182 354 ntBASIC26.14■■□□□ 1.78
CIITAP33076 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.14■■□□□ 1.78
CIITAP33076 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
CIITAP33076 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
CIITAP33076 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CIITAP33076 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
CIITAP33076 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CIITAP33076 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CIITAP33076 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
CIITAP33076 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CIITAP33076 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CIITAP33076 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.13■■□□□ 1.77
CIITAP33076 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CIITAP33076 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CIITAP33076 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CIITAP33076 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CIITAP33076 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CIITAP33076 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.12■■□□□ 1.77
CIITAP33076 KRT16P3-201ENST00000439127 1283 ntBASIC26.12■■□□□ 1.77
CIITAP33076 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.12■■□□□ 1.77
CIITAP33076 MTDHP2-201ENST00000601468 714 ntBASIC26.12■■□□□ 1.77
CIITAP33076 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.12■■□□□ 1.77
CIITAP33076 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.12■■□□□ 1.77
CIITAP33076 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CIITAP33076 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.12■■□□□ 1.77
CIITAP33076 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
CIITAP33076 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.11■■□□□ 1.77
CIITAP33076 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CIITAP33076 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.11■■□□□ 1.77
CIITAP33076 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.11■■□□□ 1.77
CIITAP33076 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CIITAP33076 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.11■■□□□ 1.77
CIITAP33076 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.11■■□□□ 1.77
CIITAP33076 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.11■■□□□ 1.77
CIITAP33076 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.11■■□□□ 1.77
CIITAP33076 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CIITAP33076 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
CIITAP33076 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
CIITAP33076 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CIITAP33076 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CIITAP33076 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CIITAP33076 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms