Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
HMGB1P09429 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.34■■□□□ 1.97
HMGB1P09429 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
HMGB1P09429 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC27.34■■□□□ 1.97
HMGB1P09429 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
HMGB1P09429 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC27.34■■□□□ 1.97
HMGB1P09429 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
HMGB1P09429 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC27.33■■□□□ 1.97
HMGB1P09429 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
HMGB1P09429 AC103834.1-201ENST00000520383 144 ntBASIC27.33■■□□□ 1.97
HMGB1P09429 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.33■■□□□ 1.97
HMGB1P09429 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
HMGB1P09429 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
HMGB1P09429 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
HMGB1P09429 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
HMGB1P09429 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
HMGB1P09429 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
HMGB1P09429 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
HMGB1P09429 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
HMGB1P09429 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
HMGB1P09429 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC27.3■■□□□ 1.96
HMGB1P09429 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
HMGB1P09429 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
HMGB1P09429 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
HMGB1P09429 YBX1P4-201ENST00000392794 808 ntBASIC27.3■■□□□ 1.96
HMGB1P09429 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC27.3■■□□□ 1.96
HMGB1P09429 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.3■■□□□ 1.96
HMGB1P09429 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
HMGB1P09429 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
HMGB1P09429 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC27.3■■□□□ 1.96
HMGB1P09429 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC27.29■■□□□ 1.96
HMGB1P09429 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
HMGB1P09429 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.29■■□□□ 1.96
HMGB1P09429 AL022069.1-201ENST00000568025 1636 ntBASIC27.29■■□□□ 1.96
HMGB1P09429 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC27.28■■□□□ 1.96
HMGB1P09429 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
HMGB1P09429 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
HMGB1P09429 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
HMGB1P09429 MIR4281-201ENST00000580852 62 ntBASIC27.28■■□□□ 1.96
HMGB1P09429 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
HMGB1P09429 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
HMGB1P09429 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
HMGB1P09429 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
HMGB1P09429 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.27■■□□□ 1.96
HMGB1P09429 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
HMGB1P09429 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
HMGB1P09429 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
HMGB1P09429 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.26■■□□□ 1.95
HMGB1P09429 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC27.26■■□□□ 1.95
HMGB1P09429 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
HMGB1P09429 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
HMGB1P09429 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
HMGB1P09429 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
HMGB1P09429 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
HMGB1P09429 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
HMGB1P09429 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
HMGB1P09429 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
HMGB1P09429 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC27.25■■□□□ 1.95
HMGB1P09429 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
HMGB1P09429 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
HMGB1P09429 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
HMGB1P09429 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
HMGB1P09429 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
HMGB1P09429 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
HMGB1P09429 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.24■■□□□ 1.95
HMGB1P09429 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC27.24■■□□□ 1.95
HMGB1P09429 AC103724.3-201ENST00000564481 992 ntBASIC27.24■■□□□ 1.95
HMGB1P09429 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC27.24■■□□□ 1.95
HMGB1P09429 KRT8P33-201ENST00000508125 1423 ntBASIC27.24■■□□□ 1.95
HMGB1P09429 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
HMGB1P09429 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
HMGB1P09429 AF131216.4-201ENST00000638924 1588 ntBASIC27.23■■□□□ 1.95
HMGB1P09429 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC27.23■■□□□ 1.95
HMGB1P09429 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
HMGB1P09429 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
HMGB1P09429 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
HMGB1P09429 LBH-205ENST00000407930 756 ntTSL 2 BASIC27.23■■□□□ 1.95
HMGB1P09429 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
HMGB1P09429 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
HMGB1P09429 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC27.22■■□□□ 1.95
HMGB1P09429 ABCB10P4-201ENST00000566803 2184 ntBASIC27.22■■□□□ 1.95
HMGB1P09429 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
HMGB1P09429 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
HMGB1P09429 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
HMGB1P09429 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC27.22■■□□□ 1.95
HMGB1P09429 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
HMGB1P09429 AC131274.2-201ENST00000580697 1507 ntBASIC27.21■■□□□ 1.95
HMGB1P09429 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
HMGB1P09429 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
HMGB1P09429 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
HMGB1P09429 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
HMGB1P09429 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
HMGB1P09429 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
HMGB1P09429 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
HMGB1P09429 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
HMGB1P09429 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
HMGB1P09429 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
HMGB1P09429 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.2■■□□□ 1.94
HMGB1P09429 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
HMGB1P09429 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms