Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.17■■■□□ 2.1
COL1A1P02452 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.17■■■□□ 2.1
COL1A1P02452 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL1A1P02452 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
COL1A1P02452 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC28.17■■■□□ 2.1
COL1A1P02452 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL1A1P02452 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL1A1P02452 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL1A1P02452 AC004448.1-201ENST00000458332 883 ntBASIC28.15■■■□□ 2.1
COL1A1P02452 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL1A1P02452 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL1A1P02452 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC28.15■■■□□ 2.1
COL1A1P02452 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC28.14■■■□□ 2.1
COL1A1P02452 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
COL1A1P02452 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL1A1P02452 GUK1-205ENST00000366722 850 ntTSL 3 BASIC28.14■■■□□ 2.09
COL1A1P02452 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC28.13■■■□□ 2.09
COL1A1P02452 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC28.13■■■□□ 2.09
COL1A1P02452 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL1A1P02452 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL1A1P02452 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC28.12■■■□□ 2.09
COL1A1P02452 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL1A1P02452 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC28.12■■■□□ 2.09
COL1A1P02452 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
COL1A1P02452 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC28.12■■■□□ 2.09
COL1A1P02452 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL1A1P02452 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC28.11■■■□□ 2.09
COL1A1P02452 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 AC106739.1-201ENST00000617035 715 ntBASIC28.11■■■□□ 2.09
COL1A1P02452 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
COL1A1P02452 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL1A1P02452 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.11■■■□□ 2.09
COL1A1P02452 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC28.1■■■□□ 2.09
COL1A1P02452 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
COL1A1P02452 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC28.1■■■□□ 2.09
COL1A1P02452 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC28.1■■■□□ 2.09
COL1A1P02452 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL1A1P02452 LSR-205ENST00000427250 1606 ntTSL 2 BASIC28.1■■■□□ 2.09
COL1A1P02452 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
COL1A1P02452 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL1A1P02452 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL1A1P02452 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL1A1P02452 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
COL1A1P02452 EBPL-204ENST00000378272 766 ntTSL 3 BASIC28.09■■■□□ 2.09
COL1A1P02452 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.09■■■□□ 2.09
COL1A1P02452 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL1A1P02452 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.09■■■□□ 2.09
COL1A1P02452 RARRES2P6-201ENST00000567333 442 ntBASIC28.08■■■□□ 2.09
COL1A1P02452 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL1A1P02452 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL1A1P02452 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL1A1P02452 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
COL1A1P02452 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL1A1P02452 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.08■■■□□ 2.09
COL1A1P02452 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL1A1P02452 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL1A1P02452 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL1A1P02452 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL1A1P02452 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
COL1A1P02452 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC28.07■■■□□ 2.08
COL1A1P02452 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
COL1A1P02452 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL1A1P02452 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC28.06■■■□□ 2.08
COL1A1P02452 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC28.06■■■□□ 2.08
COL1A1P02452 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
COL1A1P02452 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL1A1P02452 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL1A1P02452 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL1A1P02452 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL1A1P02452 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
COL1A1P02452 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC28.05■■■□□ 2.08
COL1A1P02452 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL1A1P02452 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC28.04■■■□□ 2.08
COL1A1P02452 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC28.04■■■□□ 2.08
COL1A1P02452 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
COL1A1P02452 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL1A1P02452 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL1A1P02452 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC28.03■■■□□ 2.08
COL1A1P02452 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
COL1A1P02452 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL1A1P02452 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL1A1P02452 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL1A1P02452 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC28.03■■■□□ 2.08
COL1A1P02452 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
COL1A1P02452 ZNRF2P3-201ENST00000424200 374 ntBASIC28.02■■■□□ 2.08
COL1A1P02452 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC28.02■■■□□ 2.08
COL1A1P02452 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC28.02■■■□□ 2.08
COL1A1P02452 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL1A1P02452 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL1A1P02452 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
COL1A1P02452 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL1A1P02452 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC28.02■■■□□ 2.08
COL1A1P02452 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
COL1A1P02452 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms