Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TRIM13O60858 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
TRIM13O60858 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
TRIM13O60858 AC079834.2-201ENST00000609776 1949 ntBASIC22.7■■□□□ 1.23
TRIM13O60858 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.23
TRIM13O60858 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
TRIM13O60858 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.7■■□□□ 1.22
TRIM13O60858 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
TRIM13O60858 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.7■■□□□ 1.22
TRIM13O60858 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
TRIM13O60858 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRIM13O60858 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TRIM13O60858 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.68■■□□□ 1.22
TRIM13O60858 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.68■■□□□ 1.22
TRIM13O60858 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.68■■□□□ 1.22
TRIM13O60858 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TRIM13O60858 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TRIM13O60858 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.22
TRIM13O60858 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
TRIM13O60858 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.68■■□□□ 1.22
TRIM13O60858 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.67■■□□□ 1.22
TRIM13O60858 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
TRIM13O60858 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
TRIM13O60858 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM13O60858 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
TRIM13O60858 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TRIM13O60858 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
TRIM13O60858 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
TRIM13O60858 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TRIM13O60858 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TRIM13O60858 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.66■■□□□ 1.22
TRIM13O60858 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
TRIM13O60858 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.65■■□□□ 1.22
TRIM13O60858 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM13O60858 GPX1-201ENST00000419349 1106 ntBASIC22.65■■□□□ 1.22
TRIM13O60858 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.65■■□□□ 1.22
TRIM13O60858 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM13O60858 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
TRIM13O60858 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
TRIM13O60858 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM13O60858 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM13O60858 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
TRIM13O60858 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.64■■□□□ 1.22
TRIM13O60858 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
TRIM13O60858 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
TRIM13O60858 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.64■■□□□ 1.22
TRIM13O60858 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.64■■□□□ 1.22
TRIM13O60858 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TRIM13O60858 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TRIM13O60858 AC009831.1-201ENST00000580420 1582 ntBASIC22.63■■□□□ 1.21
TRIM13O60858 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
TRIM13O60858 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM13O60858 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM13O60858 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM13O60858 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM13O60858 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM13O60858 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM13O60858 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM13O60858 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM13O60858 AC133552.2-201ENST00000619106 1032 ntBASIC22.62■■□□□ 1.21
TRIM13O60858 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM13O60858 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM13O60858 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
TRIM13O60858 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.62■■□□□ 1.21
TRIM13O60858 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
TRIM13O60858 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
TRIM13O60858 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.61■■□□□ 1.21
TRIM13O60858 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms