Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC38.36■■■■□ 3.73
CHD1O14646 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC38.36■■■■□ 3.73
CHD1O14646 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC38.36■■■■□ 3.73
CHD1O14646 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC38.35■■■■□ 3.73
CHD1O14646 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC38.35■■■■□ 3.73
CHD1O14646 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC38.35■■■■□ 3.73
CHD1O14646 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
CHD1O14646 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
CHD1O14646 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC38.35■■■■□ 3.73
CHD1O14646 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC38.34■■■■□ 3.73
CHD1O14646 AC233992.3-201ENST00000607491 485 ntBASIC38.33■■■■□ 3.73
CHD1O14646 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
CHD1O14646 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC38.32■■■■□ 3.73
CHD1O14646 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC38.32■■■■□ 3.73
CHD1O14646 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC38.32■■■■□ 3.73
CHD1O14646 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC38.32■■■■□ 3.73
CHD1O14646 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC38.32■■■■□ 3.72
CHD1O14646 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC38.32■■■■□ 3.72
CHD1O14646 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC38.31■■■■□ 3.72
CHD1O14646 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC38.31■■■■□ 3.72
CHD1O14646 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
CHD1O14646 BX842568.3-201ENST00000418104 571 ntBASIC38.3■■■■□ 3.72
CHD1O14646 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC38.3■■■■□ 3.72
CHD1O14646 LINC01003-201ENST00000564834 1764 ntBASIC38.3■■■■□ 3.72
CHD1O14646 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
CHD1O14646 GRAMD4P2-201ENST00000423297 1097 ntBASIC38.29■■■■□ 3.72
CHD1O14646 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC38.29■■■■□ 3.72
CHD1O14646 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC38.29■■■■□ 3.72
CHD1O14646 HES6-206ENST00000409574 738 ntTSL 2 BASIC38.29■■■■□ 3.72
CHD1O14646 AC006455.2-201ENST00000429931 906 ntBASIC38.29■■■■□ 3.72
CHD1O14646 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
CHD1O14646 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC38.28■■■■□ 3.72
CHD1O14646 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC38.28■■■■□ 3.72
CHD1O14646 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC38.28■■■■□ 3.72
CHD1O14646 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC38.27■■■■□ 3.72
CHD1O14646 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
CHD1O14646 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC38.26■■■■□ 3.72
CHD1O14646 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC38.26■■■■□ 3.72
CHD1O14646 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
CHD1O14646 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
CHD1O14646 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
CHD1O14646 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
CHD1O14646 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC38.26■■■■□ 3.71
CHD1O14646 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
CHD1O14646 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC38.25■■■■□ 3.71
CHD1O14646 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC38.25■■■■□ 3.71
CHD1O14646 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC38.25■■■■□ 3.71
CHD1O14646 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC38.24■■■■□ 3.71
CHD1O14646 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC38.24■■■■□ 3.71
CHD1O14646 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC38.24■■■■□ 3.71
CHD1O14646 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
CHD1O14646 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC38.24■■■■□ 3.71
CHD1O14646 EMC9-206ENST00000560403 872 ntTSL 2 BASIC38.24■■■■□ 3.71
CHD1O14646 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC38.24■■■■□ 3.71
CHD1O14646 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
CHD1O14646 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC38.24■■■■□ 3.71
CHD1O14646 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC38.24■■■■□ 3.71
CHD1O14646 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC38.23■■■■□ 3.71
CHD1O14646 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC38.23■■■■□ 3.71
CHD1O14646 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC38.23■■■■□ 3.71
CHD1O14646 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC38.23■■■■□ 3.71
CHD1O14646 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC38.23■■■■□ 3.71
CHD1O14646 AC012414.1-201ENST00000556676 535 ntBASIC38.23■■■■□ 3.71
CHD1O14646 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC38.23■■■■□ 3.71
CHD1O14646 C17orf82-201ENST00000623772 1530 ntBASIC38.22■■■■□ 3.71
CHD1O14646 AC123595.1-201ENST00000440769 1046 ntBASIC38.22■■■■□ 3.71
CHD1O14646 TK2-208ENST00000545043 1120 ntTSL 2 BASIC38.22■■■■□ 3.71
CHD1O14646 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC38.21■■■■□ 3.71
CHD1O14646 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC38.21■■■■□ 3.71
CHD1O14646 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC38.21■■■■□ 3.71
CHD1O14646 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC38.21■■■■□ 3.71
CHD1O14646 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC38.21■■■■□ 3.71
CHD1O14646 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC38.21■■■■□ 3.71
CHD1O14646 CCDC92B-201ENST00000575506 885 ntBASIC38.21■■■■□ 3.71
CHD1O14646 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC38.2■■■■□ 3.71
CHD1O14646 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC38.2■■■■□ 3.71
CHD1O14646 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC38.2■■■■□ 3.71
CHD1O14646 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC38.2■■■■□ 3.71
CHD1O14646 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC38.2■■■■□ 3.71
CHD1O14646 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.71
CHD1O14646 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.7
CHD1O14646 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC38.19■■■■□ 3.7
CHD1O14646 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC38.19■■■■□ 3.7
CHD1O14646 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
CHD1O14646 RAP2CP1-201ENST00000605103 478 ntBASIC38.19■■■■□ 3.7
CHD1O14646 AC245100.8-202ENST00000629247 1058 ntBASIC38.19■■■■□ 3.7
CHD1O14646 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC38.18■■■■□ 3.7
CHD1O14646 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC38.18■■■■□ 3.7
CHD1O14646 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
CHD1O14646 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC38.17■■■■□ 3.7
CHD1O14646 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CHD1O14646 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CHD1O14646 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC38.17■■■■□ 3.7
CHD1O14646 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CHD1O14646 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC38.17■■■■□ 3.7
CHD1O14646 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC38.16■■■■□ 3.7
CHD1O14646 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
CHD1O14646 KRT18P14-201ENST00000534205 1250 ntBASIC38.16■■■■□ 3.7
CHD1O14646 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
CHD1O14646 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC38.15■■■■□ 3.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms