Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
USP47Q96K76 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
USP47Q96K76 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP47Q96K76 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
USP47Q96K76 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
USP47Q96K76 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC21.29■■□□□ 1
USP47Q96K76 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP47Q96K76 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
USP47Q96K76 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC21.28■■□□□ 1
USP47Q96K76 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC21.28■■□□□ 1
USP47Q96K76 CLUHP2-201ENST00000426660 1303 ntBASIC21.28■■□□□ 1
USP47Q96K76 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
USP47Q96K76 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
USP47Q96K76 AC104989.1-201ENST00000519711 778 ntBASIC21.28■■□□□ 1
USP47Q96K76 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
USP47Q96K76 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC21.28■■□□□ 1
USP47Q96K76 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC21.28■■□□□ 1
USP47Q96K76 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
USP47Q96K76 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC21.27■■□□□ 1
USP47Q96K76 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 AC099336.1-201ENST00000417053 1171 ntBASIC21.27■■□□□ 1
USP47Q96K76 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC21.27■■□□□ 1
USP47Q96K76 KLF2P4-201ENST00000451959 1225 ntBASIC21.27■■□□□ 1
USP47Q96K76 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 AC092658.1-201ENST00000505836 891 ntBASIC21.27■■□□□ 1
USP47Q96K76 RNA5SP486-201ENST00000515961 83 ntBASIC21.27■■□□□ 1
USP47Q96K76 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC21.27■■□□□ 1
USP47Q96K76 RHOXF1P1-202ENST00000635473 501 ntBASIC21.27■■□□□ 1
USP47Q96K76 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
USP47Q96K76 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC21.27■■□□□ 1
USP47Q96K76 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
USP47Q96K76 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP47Q96K76 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
USP47Q96K76 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC21.27■□□□□ 0.99
USP47Q96K76 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC21.27■□□□□ 0.99
USP47Q96K76 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
USP47Q96K76 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
USP47Q96K76 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
USP47Q96K76 GZMB-202ENST00000382540 816 ntTSL 5 BASIC21.26■□□□□ 0.99
USP47Q96K76 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC21.26■□□□□ 0.99
USP47Q96K76 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC21.26■□□□□ 0.99
USP47Q96K76 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC21.26■□□□□ 0.99
USP47Q96K76 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC21.26■□□□□ 0.99
USP47Q96K76 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC21.26■□□□□ 0.99
USP47Q96K76 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC21.26■□□□□ 0.99
USP47Q96K76 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
USP47Q96K76 AL606495.2-201ENST00000605867 535 ntBASIC21.26■□□□□ 0.99
USP47Q96K76 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
USP47Q96K76 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USP47Q96K76 TNRC18P2-201ENST00000417666 2714 ntBASIC21.26■□□□□ 0.99
USP47Q96K76 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP47Q96K76 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
USP47Q96K76 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 AC006001.1-201ENST00000325130 474 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC21.25■□□□□ 0.99
USP47Q96K76 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
USP47Q96K76 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 AC026954.1-201ENST00000429771 1293 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 FO681548.1-201ENST00000455617 1132 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 AL391280.1-201ENST00000506969 1062 ntBASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms