Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 RAN-210ENST00000541630 1475 ntTSL 2 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 NCR3-202ENST00000376071 541 ntTSL 5 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 AL157407.1-201ENST00000435784 904 ntBASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 LINC01783-202ENST00000614408 828 ntBASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 BX284668.2-205ENST00000619677 828 ntBASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 CICP11-201ENST00000434745 2827 ntBASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
KRT28Q7Z3Y7 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AC234644.1-201ENST00000406065 370 ntBASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 CICP12-201ENST00000455801 843 ntBASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 NDUFS6P1-201ENST00000485187 316 ntBASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AC141586.1-203ENST00000567242 366 ntBASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AL161773.1-201ENST00000624845 863 ntBASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AC015909.3-201ENST00000572855 1794 ntBASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT28Q7Z3Y7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 AL359258.3-201ENST00000622910 2331 ntBASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 AC144522.1-201ENST00000625111 1658 ntBASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 MIR6858-201ENST00000620733 67 ntBASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC20.33■□□□□ 0.85
KRT28Q7Z3Y7 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 REXO1L4P-201ENST00000605109 1937 ntBASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 PCDH8P1-201ENST00000428983 2773 ntBASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
KRT28Q7Z3Y7 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT28Q7Z3Y7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms