Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC02447-202ENST00000501888 2146 ntBASIC17.58■□□□□ 0.4
SCN4AP35499 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SCN4AP35499 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 CTBP2P8-201ENST00000422584 1330 ntBASIC17.57■□□□□ 0.4
SCN4AP35499 AD000864.1-201ENST00000624076 2295 ntBASIC17.57■□□□□ 0.4
SCN4AP35499 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.57■□□□□ 0.4
SCN4AP35499 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.57■□□□□ 0.4
SCN4AP35499 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.57■□□□□ 0.4
SCN4AP35499 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SCN4AP35499 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.57■□□□□ 0.4
SCN4AP35499 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC17.57■□□□□ 0.4
SCN4AP35499 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC17.57■□□□□ 0.4
SCN4AP35499 MIR6816-201ENST00000620368 66 ntBASIC17.57■□□□□ 0.4
SCN4AP35499 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.57■□□□□ 0.4
SCN4AP35499 TMBIM7P-202ENST00000641474 1516 ntBASIC17.57■□□□□ 0.4
SCN4AP35499 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
SCN4AP35499 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.57■□□□□ 0.4
SCN4AP35499 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC17.57■□□□□ 0.4
SCN4AP35499 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SCN4AP35499 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SCN4AP35499 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SCN4AP35499 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SCN4AP35499 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 AP005212.2-201ENST00000584979 510 ntBASIC17.56■□□□□ 0.4
SCN4AP35499 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 AC083801.1-201ENST00000491689 358 ntBASIC17.56■□□□□ 0.4
SCN4AP35499 CISD2-202ENST00000503643 808 ntTSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC17.56■□□□□ 0.4
SCN4AP35499 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 USB1-205ENST00000561743 1135 ntTSL 3 BASIC17.56■□□□□ 0.4
SCN4AP35499 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.56■□□□□ 0.4
SCN4AP35499 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SCN4AP35499 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.56■□□□□ 0.4
SCN4AP35499 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.55■□□□□ 0.4
SCN4AP35499 ENPP7P8-202ENST00000527856 1345 ntBASIC17.55■□□□□ 0.4
SCN4AP35499 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.55■□□□□ 0.4
SCN4AP35499 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.55■□□□□ 0.4
SCN4AP35499 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC17.55■□□□□ 0.4
SCN4AP35499 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC17.55■□□□□ 0.4
SCN4AP35499 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SCN4AP35499 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 KRT8P1-201ENST00000557533 1207 ntBASIC17.55■□□□□ 0.4
SCN4AP35499 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC17.55■□□□□ 0.4
SCN4AP35499 AC006548.2-201ENST00000605217 529 ntBASIC17.55■□□□□ 0.4
SCN4AP35499 AL627230.2-201ENST00000613254 655 ntBASIC17.55■□□□□ 0.4
SCN4AP35499 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.55■□□□□ 0.4
SCN4AP35499 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.55■□□□□ 0.4
SCN4AP35499 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SCN4AP35499 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms