Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 CICP14-201ENST00000629111 2732 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 KLF2P3-201ENST00000451977 1087 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 AC125807.1-201ENST00000483097 614 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 AL079307.3-201ENST00000556114 283 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 GOLGA8DP-202ENST00000341390 2184 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 ST20-AS1-201ENST00000560255 4223 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 ACE3P-201ENST00000423435 1973 ntBASIC11.76□□□□□ -0.53
HLA-DMBP28068 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC107890.1-201ENST00000422478 521 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 DUX4L27-201ENST00000554796 1261 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC015911.4-201ENST00000588022 1070 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC092364.2-202ENST00000597012 1073 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 AL589739.1-201ENST00000607720 493 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AF228730.6-201ENST00000641497 218 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC084121.3-201ENST00000641716 218 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 REXO1L2P-201ENST00000425429 2069 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms