Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.82□□□□□ -0.04
HOXC4P09017 AC022532.1-201ENST00000624563 1728 ntBASIC14.82□□□□□ -0.04
HOXC4P09017 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
HOXC4P09017 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 KRT8P4-201ENST00000509735 1454 ntBASIC14.82□□□□□ -0.04
HOXC4P09017 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXC4P09017 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HOXC4P09017 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
HOXC4P09017 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
HOXC4P09017 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXC4P09017 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HOXC4P09017 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXC4P09017 AC007969.1-201ENST00000433675 447 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXC4P09017 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXC4P09017 AC022494.1-201ENST00000466044 728 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXC4P09017 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXC4P09017 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXC4P09017 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXC4P09017 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 AC104982.3-201ENST00000581995 514 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXC4P09017 AC008825.2-201ENST00000603374 718 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 AL022328.3-201ENST00000607943 679 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 AC005695.3-201ENST00000614522 232 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 MIR6787-201ENST00000616675 61 ntBASIC14.81□□□□□ -0.04
HOXC4P09017 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXC4P09017 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXC4P09017 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXC4P09017 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXC4P09017 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXC4P09017 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXC4P09017 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HOXC4P09017 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 RN7SKP230-201ENST00000365642 335 ntBASIC14.8□□□□□ -0.04
HOXC4P09017 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.8□□□□□ -0.04
HOXC4P09017 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HOXC4P09017 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXC4P09017 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.8□□□□□ -0.04
HOXC4P09017 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 HIST2H2BB-201ENST00000449108 381 ntBASIC14.8□□□□□ -0.04
HOXC4P09017 AC004898.1-201ENST00000451057 766 ntBASIC14.8□□□□□ -0.04
HOXC4P09017 ALG3P1-201ENST00000508806 1114 ntBASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms