Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
LDLRP01130 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.93□□□□□ -0.02
LDLRP01130 AL031055.1-201ENST00000606362 631 ntBASIC14.93□□□□□ -0.02
LDLRP01130 AC017083.2-201ENST00000608069 979 ntBASIC14.93□□□□□ -0.02
LDLRP01130 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.93□□□□□ -0.02
LDLRP01130 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LDLRP01130 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.93□□□□□ -0.02
LDLRP01130 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.93□□□□□ -0.02
LDLRP01130 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.93□□□□□ -0.02
LDLRP01130 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDLRP01130 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LDLRP01130 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.93□□□□□ -0.02
LDLRP01130 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LDLRP01130 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDLRP01130 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDLRP01130 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LDLRP01130 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
LDLRP01130 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LDLRP01130 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LDLRP01130 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LDLRP01130 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.92□□□□□ -0.02
LDLRP01130 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 GIMAP3P-201ENST00000495150 836 ntBASIC14.92□□□□□ -0.02
LDLRP01130 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.92□□□□□ -0.02
LDLRP01130 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 MIR3909-201ENST00000579518 119 ntBASIC14.92□□□□□ -0.02
LDLRP01130 SPDYE12P-201ENST00000618416 771 ntBASIC14.92□□□□□ -0.02
LDLRP01130 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 AC138969.3-201ENST00000546612 1459 ntBASIC14.92□□□□□ -0.02
LDLRP01130 AC138932.2-201ENST00000548268 1459 ntBASIC14.92□□□□□ -0.02
LDLRP01130 AC126755.4-201ENST00000549796 1459 ntBASIC14.92□□□□□ -0.02
LDLRP01130 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LDLRP01130 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.92□□□□□ -0.02
LDLRP01130 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDLRP01130 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.91□□□□□ -0.02
LDLRP01130 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 AC098614.1-201ENST00000368528 745 ntBASIC14.91□□□□□ -0.02
LDLRP01130 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 RPS2P32-201ENST00000439199 892 ntBASIC14.91□□□□□ -0.02
LDLRP01130 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.91□□□□□ -0.02
LDLRP01130 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 MIR4321-201ENST00000592276 80 ntBASIC14.91□□□□□ -0.02
LDLRP01130 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms