Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
MBD4O95243 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
MBD4O95243 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MBD4O95243 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.22■□□□□ 0.51
MBD4O95243 RPS2P32-201ENST00000439199 892 ntBASIC18.22■□□□□ 0.51
MBD4O95243 CSF2RBP1-201ENST00000447905 391 ntBASIC18.22■□□□□ 0.51
MBD4O95243 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.22■□□□□ 0.51
MBD4O95243 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.22■□□□□ 0.51
MBD4O95243 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 AC132938.4-201ENST00000623835 848 ntBASIC18.22■□□□□ 0.51
MBD4O95243 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 AC022532.1-201ENST00000624563 1728 ntBASIC18.22■□□□□ 0.51
MBD4O95243 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.22■□□□□ 0.51
MBD4O95243 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
MBD4O95243 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.22■□□□□ 0.51
MBD4O95243 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MBD4O95243 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC18.21■□□□□ 0.51
MBD4O95243 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
MBD4O95243 AC092384.3-202ENST00000564646 2873 ntBASIC18.21■□□□□ 0.51
MBD4O95243 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
MBD4O95243 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
MBD4O95243 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.21■□□□□ 0.51
MBD4O95243 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 FO681548.1-201ENST00000455617 1132 ntBASIC18.21■□□□□ 0.51
MBD4O95243 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 RNA5SP486-201ENST00000515961 83 ntBASIC18.21■□□□□ 0.51
MBD4O95243 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.21■□□□□ 0.51
MBD4O95243 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.21■□□□□ 0.51
MBD4O95243 DUX4L47-201ENST00000566374 394 ntBASIC18.21■□□□□ 0.51
MBD4O95243 RN7SL48P-201ENST00000579283 293 ntBASIC18.21■□□□□ 0.51
MBD4O95243 AC004466.1-201ENST00000599515 1080 ntBASIC18.21■□□□□ 0.51
MBD4O95243 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
MBD4O95243 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.21■□□□□ 0.51
MBD4O95243 ENPP7P14-201ENST00000621765 1040 ntBASIC18.21■□□□□ 0.51
MBD4O95243 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD4O95243 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
MBD4O95243 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD4O95243 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
MBD4O95243 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
MBD4O95243 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
MBD4O95243 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MBD4O95243 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD4O95243 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MBD4O95243 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.2■□□□□ 0.5
MBD4O95243 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MBD4O95243 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.2■□□□□ 0.5
MBD4O95243 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD4O95243 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.2■□□□□ 0.5
MBD4O95243 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MBD4O95243 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD4O95243 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms