Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LRCH3Q96II8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LRCH3Q96II8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LRCH3Q96II8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.53■□□□□ 0.24
LRCH3Q96II8 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
LRCH3Q96II8 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LRCH3Q96II8 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LRCH3Q96II8 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LRCH3Q96II8 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.53■□□□□ 0.24
LRCH3Q96II8 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.53■□□□□ 0.24
LRCH3Q96II8 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 HLA-A-202ENST00000376806 1854 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 AC092364.2-201ENST00000596710 2692 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 RN7SKP214-201ENST00000364208 315 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 AC136604.1-201ENST00000418535 575 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LRCH3Q96II8 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 AC006158.1-201ENST00000610661 249 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 TMEM14EP-202ENST00000639378 1296 ntBASIC16.52■□□□□ 0.24
LRCH3Q96II8 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.52■□□□□ 0.24
LRCH3Q96II8 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LRCH3Q96II8 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.23
LRCH3Q96II8 CAP2P1-201ENST00000557743 1390 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 HCG27-204ENST00000424675 895 ntTSL 3 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 PUDPP3-201ENST00000445368 636 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 PHKG1P2-201ENST00000457537 863 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 AL391280.1-201ENST00000506969 1062 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 MIR5196-201ENST00000578146 115 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 LINC00431-202ENST00000636375 159 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 NAP1L6-202ENST00000641404 1222 ntBASIC16.51■□□□□ 0.23
LRCH3Q96II8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LRCH3Q96II8 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LRCH3Q96II8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
LRCH3Q96II8 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LRCH3Q96II8 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms