Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC19.82■□□□□ 0.76
USP54Q70EL1 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC19.82■□□□□ 0.76
USP54Q70EL1 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.82■□□□□ 0.76
USP54Q70EL1 RPL18AP3-201ENST00000462885 528 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC19.82■□□□□ 0.76
USP54Q70EL1 IGHV3-37-201ENST00000518544 340 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 FOS-204ENST00000554617 796 ntTSL 2 BASIC19.82■□□□□ 0.76
USP54Q70EL1 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC19.82■□□□□ 0.76
USP54Q70EL1 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.82■□□□□ 0.76
USP54Q70EL1 AC092135.3-201ENST00000624151 1846 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 AC009093.10-201ENST00000641956 1442 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 AC084018.2-201ENST00000613093 2607 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.82■□□□□ 0.76
USP54Q70EL1 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP54Q70EL1 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
USP54Q70EL1 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 AC078991.1-201ENST00000437297 610 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
USP54Q70EL1 NAGK-204ENST00000443872 878 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 CFL1-206ENST00000527344 962 ntTSL 2 BASIC19.81■□□□□ 0.76
USP54Q70EL1 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 NAT9-220ENST00000582870 896 ntTSL 5 BASIC19.81■□□□□ 0.76
USP54Q70EL1 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.81■□□□□ 0.76
USP54Q70EL1 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 AL353726.2-201ENST00000623259 884 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 AC005618.3-201ENST00000624928 458 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 AC136621.1-201ENST00000624017 2304 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP54Q70EL1 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.81■□□□□ 0.76
USP54Q70EL1 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
USP54Q70EL1 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.81■□□□□ 0.76
USP54Q70EL1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 RN7SL81P-201ENST00000493781 261 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.81■□□□□ 0.76
USP54Q70EL1 WT1-AS_6.1-201ENST00000614919 121 ntBASIC19.81■□□□□ 0.76
USP54Q70EL1 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.81■□□□□ 0.76
USP54Q70EL1 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC19.81■□□□□ 0.76
USP54Q70EL1 RAN-210ENST00000541630 1475 ntTSL 2 BASIC19.81■□□□□ 0.76
USP54Q70EL1 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP54Q70EL1 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.8■□□□□ 0.76
USP54Q70EL1 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
USP54Q70EL1 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.8■□□□□ 0.76
USP54Q70EL1 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.8■□□□□ 0.76
USP54Q70EL1 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 STK26-204ENST00000481105 1835 ntTSL 2 BASIC19.8■□□□□ 0.76
USP54Q70EL1 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC19.8■□□□□ 0.76
USP54Q70EL1 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC19.8■□□□□ 0.76
USP54Q70EL1 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.8■□□□□ 0.76
USP54Q70EL1 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.8■□□□□ 0.76
USP54Q70EL1 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
USP54Q70EL1 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
USP54Q70EL1 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP54Q70EL1 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 ACE3P-201ENST00000423435 1973 ntBASIC19.79■□□□□ 0.76
USP54Q70EL1 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP54Q70EL1 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms