Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 AC026410.3-201ENST00000514280 936 ntBASIC18.54■□□□□ 0.56
VPS53Q5VIR6 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.54■□□□□ 0.56
VPS53Q5VIR6 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 COX20P2-201ENST00000452636 358 ntBASIC18.53■□□□□ 0.56
VPS53Q5VIR6 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AC124283.3-201ENST00000570869 594 ntBASIC18.53■□□□□ 0.56
VPS53Q5VIR6 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AC107373.2-201ENST00000607735 490 ntBASIC18.53■□□□□ 0.56
VPS53Q5VIR6 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS53Q5VIR6 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 AC099063.4-201ENST00000641099 1602 ntBASIC18.52■□□□□ 0.56
VPS53Q5VIR6 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 INTS4P2-202ENST00000614726 2019 ntBASIC18.52■□□□□ 0.56
VPS53Q5VIR6 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 AC104596.2-201ENST00000512793 793 ntBASIC18.52■□□□□ 0.56
VPS53Q5VIR6 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms