Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
PRKDCP78527 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 MIR4746-201ENST00000579802 71 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 CDCA4P4-201ENST00000435216 680 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC10.69□□□□□ -0.7
PRKDCP78527 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 AC018638.5-201ENST00000450885 754 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 TMA16-204ENST00000508268 608 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
PRKDCP78527 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC10.68□□□□□ -0.7
PRKDCP78527 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 RHEB-207ENST00000496004 744 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 ALG1L3P-201ENST00000503331 765 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 SEPHS2P1-201ENST00000511618 1162 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 GPX3-202ENST00000517973 612 ntTSL 3 BASIC10.68□□□□□ -0.7
PRKDCP78527 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC10.68□□□□□ -0.7
PRKDCP78527 BX322534.1-201ENST00000635574 241 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 AC215524.1-201ENST00000635696 241 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 AR-207ENST00000612010 3896 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 HLA-DMA-202ENST00000395303 1007 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 RN7SL582P-201ENST00000491078 279 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC10.68□□□□□ -0.7
PRKDCP78527 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 REXO1L4P-201ENST00000605109 1937 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
PRKDCP78527 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
PRKDCP78527 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC10.68□□□□□ -0.7
PRKDCP78527 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC10.68□□□□□ -0.7
PRKDCP78527 KNOP1P1-201ENST00000542108 989 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
PRKDCP78527 HERC2P11-201ENST00000562845 725 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 AC100756.2-201ENST00000569537 736 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC10.68□□□□□ -0.7
PRKDCP78527 LINC02199-201ENST00000506655 2702 ntBASIC10.68□□□□□ -0.7
PRKDCP78527 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
PRKDCP78527 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
PRKDCP78527 AC006449.6-201ENST00000612330 2296 ntBASIC10.67□□□□□ -0.7
PRKDCP78527 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 AC098934.1-203ENST00000442868 1262 ntBASIC10.67□□□□□ -0.7
PRKDCP78527 AP003040.1-201ENST00000532044 1024 ntBASIC10.67□□□□□ -0.7
PRKDCP78527 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC10.67□□□□□ -0.7
PRKDCP78527 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC10.67□□□□□ -0.7
PRKDCP78527 MIR6720-201ENST00000611664 98 ntBASIC10.67□□□□□ -0.7
PRKDCP78527 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC10.67□□□□□ -0.7
PRKDCP78527 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms