Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 FAM8A3P-201ENST00000427218 844 ntBASIC15.14■□□□□ 0.01
PKNOX1P55347 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.14■□□□□ 0.01
PKNOX1P55347 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 AC023141.5-201ENST00000458585 616 ntBASIC15.14■□□□□ 0.01
PKNOX1P55347 SERBP1P3-201ENST00000459980 809 ntBASIC15.14■□□□□ 0.01
PKNOX1P55347 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.14■□□□□ 0.01
PKNOX1P55347 SLED1-202ENST00000512051 380 ntBASIC15.14■□□□□ 0.01
PKNOX1P55347 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
PKNOX1P55347 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 MIR4453-201ENST00000584019 89 ntBASIC15.14■□□□□ 0.01
PKNOX1P55347 MIR6080-201ENST00000617359 66 ntBASIC15.14■□□□□ 0.01
PKNOX1P55347 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PKNOX1P55347 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 AC079781.5-202ENST00000641784 3743 ntBASIC15.13■□□□□ 0.01
PKNOX1P55347 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PKNOX1P55347 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PKNOX1P55347 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.13■□□□□ 0.01
PKNOX1P55347 GHSR-202ENST00000427970 912 ntBASIC15.13■□□□□ 0.01
PKNOX1P55347 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.13■□□□□ 0.01
PKNOX1P55347 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.13■□□□□ 0.01
PKNOX1P55347 AC015910.1-201ENST00000579400 975 ntBASIC15.13■□□□□ 0.01
PKNOX1P55347 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 AC011467.4-201ENST00000594891 528 ntBASIC15.13■□□□□ 0.01
PKNOX1P55347 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 Z97205.2-201ENST00000564697 1639 ntBASIC15.13■□□□□ 0.01
PKNOX1P55347 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.13■□□□□ 0.01
PKNOX1P55347 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PKNOX1P55347 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PKNOX1P55347 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 CETN4P-206ENST00000642099 2168 ntBASIC15.12■□□□□ 0.01
PKNOX1P55347 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms