Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
CIITAP33076 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.21■□□□□ 0.35
CIITAP33076 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.21■□□□□ 0.35
CIITAP33076 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CIITAP33076 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.21■□□□□ 0.34
CIITAP33076 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.2■□□□□ 0.34
CIITAP33076 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.2■□□□□ 0.34
CIITAP33076 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.2■□□□□ 0.34
CIITAP33076 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 CD8B2-202ENST00000417670 633 ntBASIC17.2■□□□□ 0.34
CIITAP33076 POM121L8P-201ENST00000417732 1281 ntBASIC17.2■□□□□ 0.34
CIITAP33076 POM121L9P-203ENST00000441984 1285 ntBASIC17.2■□□□□ 0.34
CIITAP33076 KLF2P4-201ENST00000451959 1225 ntBASIC17.2■□□□□ 0.34
CIITAP33076 AC026434.2-201ENST00000506094 1078 ntBASIC17.2■□□□□ 0.34
CIITAP33076 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.2■□□□□ 0.34
CIITAP33076 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 AC104989.1-201ENST00000519711 778 ntBASIC17.2■□□□□ 0.34
CIITAP33076 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.2■□□□□ 0.34
CIITAP33076 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.2■□□□□ 0.34
CIITAP33076 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.2■□□□□ 0.34
CIITAP33076 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 AP005482.1-201ENST00000563722 1273 ntBASIC17.2■□□□□ 0.34
CIITAP33076 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 MIR6805-201ENST00000615055 62 ntBASIC17.2■□□□□ 0.34
CIITAP33076 ENPP7P14-201ENST00000621765 1040 ntBASIC17.2■□□□□ 0.34
CIITAP33076 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.2■□□□□ 0.34
CIITAP33076 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CIITAP33076 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 AC023157.3-201ENST00000619086 2088 ntBASIC17.2■□□□□ 0.34
CIITAP33076 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.2■□□□□ 0.34
CIITAP33076 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.2■□□□□ 0.34
CIITAP33076 AC055811.4-201ENST00000624039 1754 ntBASIC17.2■□□□□ 0.34
CIITAP33076 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.2■□□□□ 0.34
CIITAP33076 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CIITAP33076 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 ZBED1P1-201ENST00000502364 1930 ntBASIC17.19■□□□□ 0.34
CIITAP33076 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CIITAP33076 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CIITAP33076 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
CIITAP33076 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.19■□□□□ 0.34
CIITAP33076 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 FAM197Y7-201ENST00000432892 766 ntBASIC17.19■□□□□ 0.34
CIITAP33076 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
CIITAP33076 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.19■□□□□ 0.34
CIITAP33076 CTBP2P5-201ENST00000454986 1264 ntBASIC17.19■□□□□ 0.34
CIITAP33076 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 RNA5SP486-201ENST00000515961 83 ntBASIC17.19■□□□□ 0.34
CIITAP33076 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.19■□□□□ 0.34
CIITAP33076 MIR4259-201ENST00000584466 101 ntBASIC17.19■□□□□ 0.34
CIITAP33076 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.19■□□□□ 0.34
CIITAP33076 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CIITAP33076 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.19■□□□□ 0.34
CIITAP33076 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.19■□□□□ 0.34
CIITAP33076 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.19■□□□□ 0.34
CIITAP33076 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms