Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A1P02462 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A1P02462 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL4A1P02462 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 CAP2P1-201ENST00000557743 1390 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A1P02462 AC078875.1-201ENST00000431907 724 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 RN7SL181P-201ENST00000462921 277 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A1P02462 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A1P02462 RN7SL163P-201ENST00000583100 276 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.32■□□□□ 0.52
COL4A1P02462 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A1P02462 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL4A1P02462 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 AC091951.1-201ENST00000512854 2465 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A1P02462 AC011270.2-201ENST00000624293 2550 ntBASIC18.32■□□□□ 0.52
COL4A1P02462 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A1P02462 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A1P02462 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A1P02462 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
COL4A1P02462 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL4A1P02462 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A1P02462 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A1P02462 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.31■□□□□ 0.52
COL4A1P02462 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 AC012044.1-201ENST00000603431 297 ntBASIC18.31■□□□□ 0.52
COL4A1P02462 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A1P02462 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A1P02462 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL4A1P02462 KRT8P21-201ENST00000430398 1491 ntBASIC18.31■□□□□ 0.52
COL4A1P02462 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A1P02462 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A1P02462 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A1P02462 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A1P02462 FTLP1-201ENST00000449155 526 ntBASIC18.31■□□□□ 0.52
COL4A1P02462 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A1P02462 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.31■□□□□ 0.52
COL4A1P02462 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A1P02462 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A1P02462 AC006480.2-201ENST00000609770 1337 ntBASIC18.3■□□□□ 0.52
COL4A1P02462 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL4A1P02462 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A1P02462 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A1P02462 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
COL4A1P02462 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 TMBIM7P-203ENST00000641617 1718 ntBASIC18.3■□□□□ 0.52
COL4A1P02462 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A1P02462 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms