Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 AC026748.1-201ENST00000624349 3251 ntBASIC17.71■□□□□ 0.42
CTDNEP1O95476 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.42
CTDNEP1O95476 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.71■□□□□ 0.42
CTDNEP1O95476 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CTDNEP1O95476 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 RNU1-114P-201ENST00000365297 166 ntBASIC17.7■□□□□ 0.42
CTDNEP1O95476 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 MYCLP2-201ENST00000449268 967 ntBASIC17.7■□□□□ 0.42
CTDNEP1O95476 RPL13AP25-201ENST00000484130 612 ntBASIC17.7■□□□□ 0.42
CTDNEP1O95476 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 AC005252.2-201ENST00000624630 1141 ntBASIC17.7■□□□□ 0.42
CTDNEP1O95476 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 AP001267.2-201ENST00000532619 2086 ntBASIC17.7■□□□□ 0.42
CTDNEP1O95476 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CTDNEP1O95476 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTDNEP1O95476 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AL391825.1-201ENST00000457671 1364 ntBASIC17.69■□□□□ 0.42
CTDNEP1O95476 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AL139094.1-201ENST00000405549 1188 ntBASIC17.69■□□□□ 0.42
CTDNEP1O95476 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.69■□□□□ 0.42
CTDNEP1O95476 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 DUX4L47-201ENST00000566374 394 ntBASIC17.69■□□□□ 0.42
CTDNEP1O95476 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 BX539320.1-201ENST00000623759 877 ntBASIC17.69■□□□□ 0.42
CTDNEP1O95476 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CTDNEP1O95476 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDNEP1O95476 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CTDNEP1O95476 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CTDNEP1O95476 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.68■□□□□ 0.42
CTDNEP1O95476 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.68■□□□□ 0.42
CTDNEP1O95476 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDNEP1O95476 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.68■□□□□ 0.42
CTDNEP1O95476 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms