Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 GUK1-206ENST00000366723 845 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
HOXA3O43365 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 OLR1-203ENST00000432556 950 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 AC099548.2-209ENST00000480264 625 ntBASIC12.38□□□□□ -0.43
HOXA3O43365 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXA3O43365 AC020907.1-201ENST00000616460 1350 ntBASIC12.38□□□□□ -0.43
HOXA3O43365 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 AC132872.4-202ENST00000622924 2756 ntBASIC12.38□□□□□ -0.43
HOXA3O43365 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA3O43365 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HOXA3O43365 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA3O43365 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA3O43365 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXA3O43365 LINC02447-202ENST00000501888 2146 ntBASIC12.37□□□□□ -0.43
HOXA3O43365 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXA3O43365 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA3O43365 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA3O43365 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA3O43365 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA3O43365 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA3O43365 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 AC078819.1-201ENST00000547454 765 ntBASIC12.37□□□□□ -0.43
HOXA3O43365 AC012085.1-201ENST00000548270 765 ntBASIC12.37□□□□□ -0.43
HOXA3O43365 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXA3O43365 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA3O43365 DUX4L45-201ENST00000566406 1057 ntBASIC12.37□□□□□ -0.43
HOXA3O43365 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.37□□□□□ -0.43
HOXA3O43365 AC025181.2-201ENST00000606994 802 ntBASIC12.37□□□□□ -0.43
HOXA3O43365 AC244093.1-201ENST00000610837 814 ntBASIC12.37□□□□□ -0.43
HOXA3O43365 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA3O43365 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
HOXA3O43365 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA3O43365 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms