Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ADH5P3-201ENST00000433842 1137 ntBASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AC092865.6-201ENST00000642101 219 ntBASIC15□□□□□ -0.01
CCDC28BQ9BUN5 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AC018529.2-202ENST00000611482 3087 ntBASIC15□□□□□ -0.01
CCDC28BQ9BUN5 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AC015802.1-201ENST00000588104 1449 ntBASIC15□□□□□ -0.01
CCDC28BQ9BUN5 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC126335.2-201ENST00000623362 4637 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC099521.3-201ENST00000624251 2938 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC104457.1-201ENST00000401024 814 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 HIST3H2BA-201ENST00000436555 524 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 IGHV3-62-201ENST00000520057 340 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC091812.2-201ENST00000619081 385 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC084121.4-201ENST00000641598 221 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AF228730.8-201ENST00000642140 221 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC138969.3-201ENST00000546612 1459 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC138932.2-201ENST00000548268 1459 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AC126755.4-201ENST00000549796 1459 ntBASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28BQ9BUN5 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms