Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 SSR4P1-203ENST00000599569 2260 ntBASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 INE2-201ENST00000630399 1874 ntBASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 BCYRN1-201ENST00000418539 200 ntBASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 HSPB1P2-201ENST00000448722 546 ntBASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AL022328.3-201ENST00000607943 679 ntBASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PAAF1Q9BRP4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AP000845.1-201ENST00000581677 2131 ntBASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AC103810.3-201ENST00000583567 96 ntBASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PAAF1Q9BRP4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms