Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 MIR346-201ENST00000362234 95 ntBASIC13.51□□□□□ -0.25
NKX3-1Q99801 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 IGHV3-62-201ENST00000520057 340 ntBASIC13.51□□□□□ -0.25
NKX3-1Q99801 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AP001160.2-201ENST00000596071 487 ntBASIC13.51□□□□□ -0.25
NKX3-1Q99801 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AC026120.1-201ENST00000611536 926 ntBASIC13.51□□□□□ -0.25
NKX3-1Q99801 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 MTHFR-210ENST00000641407 2387 ntBASIC13.51□□□□□ -0.25
NKX3-1Q99801 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 AL645939.2-201ENST00000427340 991 ntBASIC13.5□□□□□ -0.25
NKX3-1Q99801 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ACE3P-201ENST00000423435 1973 ntBASIC13.5□□□□□ -0.25
NKX3-1Q99801 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ELL2P1-201ENST00000413990 1906 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms